BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933767
Length=809
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32050.1 | Symbols: | Family of unknown function (DUF572) ... 1092 0.0
> AT2G32050.1 | Symbols: | Family of unknown function (DUF572)
| chr2:13637879-13638643 REVERSE LENGTH=765
Length=765
Score = 1092 bits (591), Expect = 0.0
Identities = 708/762 (93%), Gaps = 18/762 (2%)
Strand=Plus/Plus
Query 21 ATGGGTGAAAGAAAAGGCTTGAGCAAATACTATCCACCAAACTTTGATCCGAGGAAGATT 80
|||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct 1 ATGGGTGAAAGAAAAGGCTTGAACAAATACTATCCACCAAACTTTGATCCGAAGCAGATT 60
Query 81 CCCCGGATCCGAAAACCTAAGAATCAGCAAAAGAAGTTTCGTTCGATGGTTCCGTTACGT 140
|| |||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||
Sbjct 61 CCTCGGATCCGAAAACCTAAGAATCAGCAAAGGAAGATTCGTTCGATGGTTCCATTACGT 120
Query 141 ATTCGATGCAACACATGTGGGAATTACATGTCGGAAGGTACCAAAATTAATTGCCGTGAA 200
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 ATTCGATGCAACACCTGTGGGAATTACATGTCGGAAGGTACCAAAATCAATTGCCGTGAA 180
Query 201 GAAAAAGTAATCGGAGAAACCTACATAGGGATCAAAATCCATAGGTTTTACTTCAAGTGT 260
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 GAAAACGTAATCGGAGAAACCTACTTAGGGATCAAAATCCATAGGTTTTACTTCAAGTGC 240
Query 261 AGTAAGTGTTGCGCCGAGCTGATATTGAAGACCGATTCAAAGAATTCGAGTTATGTAGCC 320
|||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 241 AGTAAGTGTTGCACCGAGCTGATATTGAAGACTGATCCAAAGAATTCGAGTTATGTAGCC 300
Query 321 GAATCAGGTGCAACTTGTGTTTATGATCAACACGAGGAGGAGAAGAAGCAAGCCGAGGA- 379
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 301 GAATCAGGTGCAACTTGTGTTTATGATCAACACGAGGAGGAG--GA-GCAAGCCGAGGAC 357
Query 380 GAGAGGGGAT-GTGATGAGTTCTTTAGAGAAGAGAACTTTGGTTTCCAAAAGAGAGATTG 438
| | |||||| | ||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 358 G-GTGGGGATAG-GATGAGTTCTTTAGAGAAGAGAACTTTGGTTTCGAAAAGAGAGGTTG 415
Query 439 ATGTTATGGCTGCACTTGATGAGATGAAATCTATGAAATTTAGACGCGTGTCGGTGAGTG 498
|||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 416 ATGTAATGGCTGCACTTGATGAGATGAAATCTATGAAATCTAGACGCGTATCGGTGAGTG 475
Query 499 TAGACTCTATGCTTGAGGCTTTGAGTAGAAGACATAAAGAAGAAGAAGAAGTTGCAAAAG 558
|||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||| |
Sbjct 476 TAGACTCTATGCTTGAGGATTTGAGTAAAAGACACAAAGAAGAAGAAGAAGTTGCAAAGG 535
Query 559 AGGAAGATGCAGCGTTGGTAAAGTCCATCAGATTTGGTAAGCAGAGGAGGATTGTGGACG 618
||||||||||||||||| ||||||| | || |||||||||||||||||||||||| ||||
Sbjct 536 AGGAAGATGCAGCGTTGATAAAGTCTACCAAATTTGGTAAGCAGAGGAGGATTGTCGACG 595
Query 619 AAGAAACCGATGAGAT--A-AAGA--AAG---G-AAGAATGGAGGTAATAGATGCGAAGA 669
||||||| |||||||| | |||| ||| | ||||||||||| | |||||| |||||
Sbjct 596 AAGAAACTGATGAGATGGAGAAGACGAAGAAAGTAAGAATGGAGGCAGTAGATGAGAAGA 655
Query 670 AACCTAAGACTAAGAAACTTGCTTGCATTATAACCTTGAAGAAGAAGAGAAGACAACAAG 729
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 656 AACCTAAGACTAAGAAACTTGCTTGCATTATAACCTTGAAGAAGAAGA-A-GACAACAAG 713
Query 730 TTTGGGACTCGCATCACTATGCGACAATTATGGTGCTGATGA 771
|||||||||||||||||||||| |||| ||||||||||||||
Sbjct 714 TTTGGGACTCGCATCACTATGCCACAACTATGGTGCTGATGA 755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39383571248
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5