BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933769
Length=877
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32070.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 1339 0.0
AT1G80780.3 | Symbols: | Polynucleotidyl transferase, ribonucl... 640 0.0
> AT2G32070.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr2:13640668-13641953 REVERSE
LENGTH=1152
Length=1152
Score = 1339 bits (725), Expect = 0.0
Identities = 814/858 (95%), Gaps = 2/858 (0%)
Strand=Plus/Plus
Query 7 tcatcatcatcattatcatcgtcatGTCGCTATTTCTAAAAGACGATTCGATTCAAATCC 66
||||||||||| |||||||| |||||| || ||||||||||||||||||||||||||||
Sbjct 141 TCATCATCATCGTTATCATCACCATGTCACTGTTTCTAAAAGACGATTCGATTCAAATCC 200
Query 67 GTGAAGTATGGAACGAAAATCTCGAATCAGAAATGGCTCTGATTCGAGAAGTCGTCGACG 126
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 201 GTGAAGTATGGAACGACAATCTCGAATCAGAGATGGCTCTGATTCGAGAAGTCGTAGACG 260
Query 127 ATTTCCCATTCGTAGCGATGGACACAGAGTTCCCCGGAATCGTGTGTAGACCAGTGGGAA 186
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 261 ATTTCCCATTCGTAGCGATGGACACAGAGTTCCCAGGAATCGTGTGTAGACCAGTGGGAA 320
Query 187 CATTCAAAACCAACACAGAGTACCACTATGAAACCCTCAAAACAAACGTCAACATACTCA 246
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 321 CATTCAAAACCAACACAGAGTACCACTACGAAACTCTCAAAACAAACGTCAACATACTCA 380
Query 247 AGATGATTCAGCTCGGACTCACTTTCTCTGATGAGAAAGGAAACCTCCCAACGTGTGGAA 306
||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 381 AGATGATTCAGCTTGGACTCACTTTCTCTGATGAGAAAGGTAACCTCCCAACTTGTGGAA 440
Query 307 CAGACAACAAATACTGCATCTGGCAGTTCAATTTCCGTGAATTCGACCTCGAATCCGACA 366
|||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 441 CAGACAACAAGTATTGCATCTGGCAGTTCAATTTCCGCGAATTCGACCTCGAATCCGATA 500
Query 367 TTTACGCTACTGATTCCATCGAGCTTCTTCGTCAATCAGGCATCGATTTCGCT-AAAAAC 425
| |||||||| ||||| |||||||||||||||||||||||||||||||||| | ||||||
Sbjct 501 TCTACGCTACCGATTCGATCGAGCTTCTTCGTCAATCAGGCATCGATTTCG-TGAAAAAC 559
Query 426 AACCAATTCGGTATCGATTCGAAACGTTTCGCCGAGCTTTTGATGTCATCAGGGATTGTT 485
||| ||||||||||||||||||| || ||||| |||||||||||||| |||||||||||
Sbjct 560 AACGAATTCGGTATCGATTCGAAGCGGTTCGCTGAGCTTTTGATGTCTTCAGGGATTGTG 619
Query 486 TTGAATGAAAACGTTCATTGGGTTACATTCCACAGCGGATATGATTTTGGTTACTTGTTG 545
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 620 TTGAATGAAAACGTTCATTGGGTTACATTCCACAGCGGATACGATTTCGGTTACTTGTTG 679
Query 546 AAGCTATTGACTTGTCAGAATCTGCCGGAAACACAAACGGGGTTTTTCGAGATGATCAGT 605
||||||||||||||||||||||| || || || ||||| ||||| |||||||||||||||
Sbjct 680 AAGCTATTGACTTGTCAGAATCTTCCCGAGACGCAAACAGGGTTCTTCGAGATGATCAGT 739
Query 606 GTGTATTTCCCGAGGGTTTACGATATCAAACACTTGATGAAGTTCTGTAATAGTCTTCAT 665
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 740 GTGTATTTCCCGAGGGTTTATGATATCAAACACTTGATGAAGTTCTGTAATAGTCTTCAT 799
Query 666 GGAGGTCTGAACAAATTGGCGGAGCTGCTTGAAGTTGAGAGAGTTGGGATATGTCACCAG 725
||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 800 GGAGGTCTGAATAAATTGGCGGAGCTGCTTGATGTTGAGAGAGTTGGGATTTGTCACCAG 859
Query 726 GCGGGATCGGATAGCTTGTTAACGTCGTGTACATTCAGGAAGCTGCAGGAGAATTTCTTC 785
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 GCCGGATCGGATAGCTTGTTAACGTCGTGTACATTCAGGAAGCTGCAGGAGAATTTCTTC 919
Query 786 ATTGGTTCAATGGAGAAATATTCTGGTGTTTTGTATGGATTAGGTGTTGAGAATGGTCAG 845
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 920 ATTGGTTCAATGGAGAAGTATTCTGGTGTTTTGTATGGTTTAGGTGTTGAGAATGGTCAG 979
Query 846 ATTGTTCATTGATAAAAG 863
||||||||||||||||||
Sbjct 980 ATTGTTCATTGATAAAAG 997
> AT1G80780.3 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr1:30358162-30359606 FORWARD
LENGTH=1156
Length=1156
Score = 640 bits (346), Expect = 0.0
Identities = 675/832 (81%), Gaps = 29/832 (3%)
Strand=Plus/Plus
Query 22 tcatcgtcatGTCGCTATTTCTAAAAGACGATTCGATTCAAATCCGTGAAGTATGGAACG 81
|||| | |||||| || ||||| |||||||||||||||||||| || ||||| |||||||
Sbjct 265 TCATAGACATGTCTCTGTTTCTGAAAGACGATTCGATTCAAATTCGCGAAGTCTGGAACG 324
Query 82 AAAATC-TCGAATCAGAAATGGCTCTGATTCGAGAAGTCGTCGACGATTTCCCATT-CGT 139
| || | || || |||||||| |||||| ||||| ||||||||||| ||||| || |||
Sbjct 325 ATAACCTTC-AAGAAGAAATGGATCTGATCCGAGATGTCGTCGACGACTTCCC-TTACGT 382
Query 140 AGCGATGGACACAGAGTTCCCCGGAATCGTGTGT-AGACCAGTGGGAACATTCAAAACCA 198
|| |||||||| ||||||||||| ||||| || |||| || ||||| |||||| |||
Sbjct 383 CGCCATGGACACTGAGTTCCCCGGCATCGT-CGTCCGACCTGTCGGAACTTTCAAATCCA 441
Query 199 ACACAGAGTACCACTATGAAACCCTCAAAACAAACGTCAACATACTCAAGATGATTCAGC 258
|| | || |||||||| |||||| | || || ||||||||||| ||||||||||| ||||
Sbjct 442 ACGCTGATTACCACTACGAAACCTTGAAGACGAACGTCAACATCCTCAAGATGATCCAGC 501
Query 259 TCGGACTCACTTTCTCTGATGAGA-AAGGAAACCTCCCAACGTGTGGAACAGACAACAAA 317
| || ||||||||||| |||| | |||| |||||||| || ||||| || | ||||
Sbjct 502 TTGGCCTCACTTTCTCCAATGA-ACAAGGCAACCTCCCTACCTGTGGCACTG---ACAAG 557
Query 318 TACTGCATCTGGCAGTTCAATTTCCGTGAATTCGACCTCGAATCCGACAT-TTACGCTAC 376
|| ||||||||||| ||||||||||| |||||||| ||||| ||||| || || |||| |
Sbjct 558 TATTGCATCTGGCAATTCAATTTCCGAGAATTCGATCTCGATTCCGATATCTT-CGCT-C 615
Query 377 T-GATTCCATCGAGCTTCTTC--GTCAATCAGGCATCGA-TTTCGCTAAAAACAAC-CAA 431
| |||||||||||||||| || | |||||||||||||| || || |||||| || | |
Sbjct 616 TCGATTCCATCGAGCTTC-TCAAG-CAATCAGGCATCGACCTT-GCCAAAAAC-ACGCTA 671
Query 432 TTCGGTATCGATTCGAA-ACGTTTCGCCGAGCTTTTGATGTCATCAGGGATTGTTTTGAA 490
||| |||||||| || | | ||||| ||||| || ||||| || ||||| || |||||
Sbjct 672 GACGGGATCGATTCCAAGA-GATTCGCAGAGCTCTTAATGTCCTCCGGGATCGTCTTGAA 730
Query 491 TGAAAACGTTCATTGGGTTACATTCCACAGCGGATATGATTTTGGTTACTTGTTGAAGCT 550
|||||||| |||||||||||||||||||| || || ||||| || |||||| | |||||
Sbjct 731 CGAAAACGTGCATTGGGTTACATTCCACAGTGGGTACGATTTCGGATACTTGCTAAAGCT 790
Query 551 ATTGACTTGTCAGAATCTGCCGGAAACACAAACGGGGTTTTTCGAGATGATCAGTGTGTA 610
|||||||| || || |||||||| | ||||| | || ||| || | |||| || ||
Sbjct 791 CTTGACTTGCCAAAACCTGCCGGATTCGCAAACAGACTTCTTCAAGCTCATCAACGTTTA 850
Query 611 TTTCCCGAGGGTTTACGATATCAAACACTTGATGAAGTTCTGTAATAGTCTTCATGGAGG 670
||| |||| || ||||| || |||||| ||||||||||||| || || ||||| || ||
Sbjct 851 TTTTCCGACCGTGTACGACATTAAACACCTGATGAAGTTCTGCAACAGCCTTCACGGTGG 910
Query 671 TCTGAACAA-ATTGGCGGAGCTGCTTGAAGTTGAGAGAGTTGGGATATGTCACCAGGCGG 729
||| ||||| || |||||| |||| ||||| |||||||||||||| |||||||| || |
Sbjct 911 TCTCAACAAGCTT-GCGGAGTTGCTGGAAGTGGAGAGAGTTGGGATCTGTCACCAAGCTG 969
Query 730 GATCGGATAGCTTGTTAACGTCGTGTACATTCAGGAAGCTGC-AGGAGAATTTCTTCATT 788
| |||||||| || | ||||| ||||| ||||| ||||| | |||||||||||||| ||
Sbjct 970 GTTCGGATAGTTTACTCACGTCTTGTACTTTCAGAAAGCT-CAAGGAGAATTTCTTCGTT 1028
Query 789 GGTTCAATGGAGAAATATTCTGGTGTTTTGTATGGATTAGGTGTTGAGAATG 840
||| | || | ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1029 GGTCCGTTGCACAAATATTCTGGTGTTTTGTATGGATTAGGTGTTGAAAATG 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42799493244
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5