BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933774
Length=1448
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32120.1 | Symbols: HSP70T-2 | heat-shock protein 70T-2 | ch... 2137 0.0
> AT2G32120.1 | Symbols: HSP70T-2 | heat-shock protein 70T-2 |
chr2:13651510-13653920 REVERSE LENGTH=2092
Length=2092
Score = 2137 bits (1157), Expect = 0.0
Identities = 1340/1430 (94%), Gaps = 6/1430 (0%)
Strand=Plus/Plus
Query 21 ATGAAGCGGCTCATTGGCCGTGCAGACACTGATCCTGTGGTTCACGCTAGCAAGAACCTT 80
|||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 476 ATGAAGCGGCTCGTTGGTCGTGTAGACACTGATCCTGTGGTTCACGCTAGCAAGAACCTT 535
Query 81 CCTTTCTTGGTTCAAACTCTTGACATTGGAGTCAGACCGTTTATCGCGGCTTTGGTGAAC 140
||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||
Sbjct 536 CCTTTCTTGGTTCAAACTCTTGATATTGGAGTTAGACCGTTTATTGCAGCTTTGGTGAAC 595
Query 141 AATGCTTGGAGATCTACGACTCCTGAGGAAGTTTTAGCGATATTCCTTGTGGAATTGCGT 200
|||||||||||||| || || || |||||||||||||| ||||| || ||||| || |||
Sbjct 596 AATGCTTGGAGATCAACAACACCAGAGGAAGTTTTAGCTATATTTCTGGTGGAGTTACGT 655
Query 201 CTAATGGCTGAAGCTCAGTTGAAACGGCCTGTGAGAAATGTGGTACTCACGGTTCCGGTT 260
|| ||||||||||||||||||||||| |||||||||||||| || || ||||||||||||
Sbjct 656 CTGATGGCTGAAGCTCAGTTGAAACGTCCTGTGAGAAATGTAGTGCTTACGGTTCCGGTT 715
Query 261 TCGTTTTCTAGGTTCCAGCTCACACGGATT-GAACGTGCTTGTGCTATGGCTGGACTTCA 319
||||| ||||||||||||||||||||| || ||| | ||||| |||||||||||||||||
Sbjct 716 TCGTTCTCTAGGTTCCAGCTCACACGG-TTCGAAAGAGCTTGCGCTATGGCTGGACTTCA 774
Query 320 TGTACTTCGTTTGATGCCAGAACCAACTGCAATTGCGTTACTTTATGCGCAACAGCAGCA 379
||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 775 TGTTCTTCGTTTGATGCCGGAACCAACTGCTATTGCGTTGCTTTATGCGCAACAGCAGCA 834
Query 380 GATGACTACGCACGATAACATGGGAAGCGGAAGCGAGAGGCTTGCGGTTATATTCAATAT 439
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GATGACTACCCATGATAACATGGGAAGCGGAAGCGAGAGGCTTGCGGTTATATTCAATAT 894
Query 440 GGGTGCTGGTTATTGCGATGTTGCTGTTACTGCAACTGCTGGTGGTGTTTCACAGATAAA 499
||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 895 GGGAGCTGGTTACTGCGATGTTGCGGTTACTGCTACTGCTGGTGGTGTTTCACAGATAAA 954
Query 500 AGCTTTAGCTGGAAGCCCCATTGGAGGAGAAGACGTTTTGCAGAACACAATGCGCCATAT 559
|||||||||||| ||||||||||| || |||||| |||||||||||||||| ||||||||
Sbjct 955 AGCTTTAGCTGGTAGCCCCATTGGGGGTGAAGACATTTTGCAGAACACAATTCGCCATAT 1014
Query 560 TGCGCCACC-AACTGAAGAAGCTTCGGGGTTGCTCCGTGTAGCGACACAGGACGCTATTC 618
|| ||||| || ||||||||||||||||||||| ||||||||| |||||||||| ||||
Sbjct 1015 CGCTCCACCTAA-TGAAGAAGCTTCGGGGTTGCTTCGTGTAGCGGCACAGGACGCGATTC 1073
Query 619 ACAGGCTATCGGATCAAGAAAATGTCCAAATTGAAGTGGATTTGGGAAACGGTAACAAGA 678
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1074 ACAGGCTAACGGATCAAGAAAATGTCCAAATTGAAGTGGATTTGGGAAATGGTAACAAGA 1133
Query 679 TTTCCAAGGTTCTTGATAGATTGGAGTTTGAGAAAGTGAACCAGAAGGTATTTGAGGAAT 738
| ||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||
Sbjct 1134 TATCCAAGGTTCTTGATAGGTTAGAGTTTGAGGAAGTGAACCAGAAGGTATTTGAGGAAT 1193
Query 739 GTGAGAGACTTGTTGTGCAGTGTCTGCGAGATGCGAGAGTCGA-GGTTGGTGATATCGAT 797
|||||||||||||||||||||| |||||||||||||||||| | || |||||||||||||
Sbjct 1194 GTGAGAGACTTGTTGTGCAGTGCCTGCGAGATGCGAGAGTCAATGG-TGGTGATATCGAT 1252
Query 798 GATGTGATAATGGTTGGAGGGTGTTCTTACATCCCGAAAGTAAGAACTATTATCAAGAAC 857
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1253 GATTTGATAATGGTTGGAGGGTGTTCGTACATCCCGAAAGTAAGAACTATTATCAAGAAC 1312
Query 858 GTGTGCAAGAAAGACGAGATTTACAAAGGCGTGAATCCGTTAGAAGCTGCGGTTAGGGGA 917
|| |||||||| || ||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct 1313 GTATGCAAGAAGGATGAGATATACAAAGGCGTGAATCCTTTAGAAGCTGCGGTTAGAGGA 1372
Query 918 GCTGCCTTGGAAGGTGCGGTGACTTCAGGGATTCATGATCCGTTTGGGAGCTTAGATCTC 977
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1373 GCTGCTTTGGAAGGTGCGGTGACTTCAGGGATTCATGATCCTTTTGGGAGCTTAGATCTG 1432
Query 978 TTAACCATACAAGCCACACCTCTTGCAGTTGGAGTAAGAGCTAACGGAAACAAATTCATA 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 TTAACCATACAAGCCACACCTCTTGCAGTTGGAGTAAGAGCTAACGGAAACAAATTCATA 1492
Query 1038 CCCGTGATTCCGCGTAACACGATGGTTCCAGCGCGGAAAGACCTCTTCTTCACAACGGTT 1097
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1493 CCCGTGATTCCGCGTAACACAATGGTTCCAGCGCGGAAAGACCTCTTCTTCACAACGGTT 1552
Query 1098 CAAGACAACCAGAAAGAAGCTCTGATCATTATATACGAAGGAGAAGGAGAGACTGTTGAA 1157
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 CAAGACAACCAGAAGGAAGCTCTGATCATTATATACGAAGGAGAAGGAGAGACTGTTGAA 1612
Query 1158 GAGAACCATCTTCTTGGGTATTTCAAGATAGTTGGGATTCCGCCGGCGCCTAAAGGTGTT 1217
||||| ||||||||||| ||||||||| | |||||||||||||| || || |||||||||
Sbjct 1613 GAGAATCATCTTCTTGGTTATTTCAAGCTCGTTGGGATTCCGCCAGCACCGAAAGGTGTT 1672
Query 1218 CCGGAGATCAATGTTTGTATGGACATCGATGCGTCGAATGCTTTACGGGTTTTTGCAGCT 1277
|| ||||||||||| ||||||||||| ||||| || ||||||||||||||||| ||||||
Sbjct 1673 CCAGAGATCAATGTGTGTATGGACATTGATGCATCAAATGCTTTACGGGTTTTCGCAGCT 1732
Query 1278 GTGTTGATGCCGGGATCTTCGACTCCGGTGGTTCCTGTGATTGAGGTGAGGATGCCTACA 1337
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1733 GTGTTGATGCCGGGATCTTCGAGTCCAGTGGTTCCTGTGATTGAGGTGAGGATGCCTACG 1792
Query 1338 GTTGATGATGGACATGGTTGGTGTGCTCAAGCTTTGAATGTGAAATATGGATCTACTCTT 1397
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1793 GTTGATGATGGACATGGTTGGTGTGCTCAAGCTTTGAATGTGAAATATGGAGCTACTCTT 1852
Query 1398 GATTTGATTACTCTTCAGAGGAAGATGTAAGATTAAAATAAAATGGTGTT 1447
|||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1853 GATTTGATTACTCTTCAGAGAAAGATGTAAGATTAAAATAAAATGGTGTT 1902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71385174990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5