BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933779
Length=1048
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27410.1 | Symbols: | Domain of unknown function (DUF313) ... 664 0.0
AT2G32645.1 | Symbols: | Domain of unknown function (DUF313) ... 457 1e-127
AT2G32905.1 | Symbols: | Domain of unknown function (DUF313) ... 222 5e-57
> AT2G27410.1 | Symbols: | Domain of unknown function (DUF313)
| chr2:11724427-11725419 REVERSE LENGTH=993
Length=993
Score = 664 bits (359), Expect = 0.0
Identities = 521/597 (87%), Gaps = 20/597 (3%)
Strand=Plus/Plus
Query 297 ACGCGTGC-CATCGAACAACAAAGATCAGTCACTTCCGTGGAACCAGTACT--ACAAAAC 353
|||||||| | ||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 5 ACGCGTGCGC-TCGAACAACAAAGATCAATCACTTCCGTGGAACCAGTACTACACAAAAC 63
Query 354 CCTAATCTG-GGTTTAGAGTCTTCTCCTTCTTCTTACGTTAGTCGTCGTTCCAAGGAAAA 412
||||||| | |||||||| | |||||||||||||| |||| |||||| ||||| |||||
Sbjct 64 CCTAATC-GAGGTTTAGAACCGTCTCCTTCTTCTTATGTTACTCGTCGGTCCAAAGAAAA 122
Query 413 ACGTCCCATTAACGTGGAAAAGAGAAGTCGA-AAGAAACGCAAAGTCGTTAGTCCTTTAG 471
|||||||||||| |||||||||||||||| | |||||||||||| || || |||||||||
Sbjct 123 ACGTCCCATTAATGTGGAAAAGAGAAGTC-ACAAGAAACGCAAAATCATTTGTCCTTTAG 181
Query 472 AGGTGGAACCAATTCAAACAACTCCATCGGAGTGGCTTTTGAACGTGATGAGGAGAGAAG 531
||| |||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||
Sbjct 182 AGGAGGAACCCATTCAAACAACTCCACCGGAGTGGCTCTTGAACGTCATGAGGAGAGAAG 241
Query 532 AGAACGGCTACAATCCGAAGCTGATCTCAACGAGGCAACTCTTTCAGACTGATCTCAGAA 591
||||||| |||||||||||| ||||||||||||||||||| | | |||| ||||||| ||
Sbjct 242 AGAACGGTTACAATCCGAAGTTGATCTCAACGAGGCAACTGTATAAGACCGATCTCA-AA 300
Query 592 CACAC-CAAGCACGTCTCTCAGTACCCTTTAAGCAGGTTATCAA-TCCGGACTTTTTGAC 649
| || |||||||||||||||| || ||||||||||| | || |||||||||||||||
Sbjct 301 AAAACTGAAGCACGTCTCTCAGTTCCTTTTAAGCAGGTGA-AAACTCCGGACTTTTTGAC 359
Query 650 AGAGAATGAGACAAGAATCATAAATGAAAATGCCATGAAGATTCGTGACGATGGTGTGAG 709
|||| | ||||||||||||||| |||| ||||||||||||||||||||| ||||||||
Sbjct 360 AGAGGACGAGACAAGAATCATACATGAGAATGCCATGAAGATTCGTGACAATGGTGTGCC 419
Query 710 TGTGGATTTGGTGGATCCTAATCGGAAGAAGCATGAGCTTGAGTTGAGGAAGTGGAAGAT 769
|||| |||| ||||||||| | | ||| ||||||| |||||| |||||||||||||| ||
Sbjct 420 TGTGAATTTCGTGGATCCTGAGCTGAATAAGCATGTGCTTGAATTGAGGAAGTGGAAAAT 479
Query 770 GAGTGGAAACTGGTA-TTATAACTTTGTTAAAGGTTGGAAAAATGTGCTTGATGC---TA 825
|| ||||||||| | |||| ||||||||||||||||||||| ||||||||||| ||
Sbjct 480 GAAAGGAAACTGG-ATTTATGTCTTTGTTAAAGGTTGGAAAAACGTGCTTGATGCTTGTA 538
Query 826 ATA-G--CTTTAAGAAAGAAGACGTCTACCCTCTCTGGTCTTTCCGATCTGGAACAG 879
| | | |||||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct 539 AGACGTTGTTTAAGGAAGACGACGTCTATCCTCTCTGGTCTTTCCGATCTGGAACAG 595
Score = 209 bits (113), Expect = 4e-53
Identities = 149/166 (90%), Gaps = 4/166 (2%)
Strand=Plus/Plus
Query 882 TCTGGCCGTGGAAACTCTCTTCCTGGGGGCGATGGCGCTTCGACTTCCGGTGAATCTGGC 941
|||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 628 TCTGGCCGTGGAAACTCTCTTCCTGGCGGTGATGGCGCTTCTACTTCCGGTGAATCTGGT 687
Query 942 CAGGTACCTGTT-CCTC-CTCCTCCGGCAAGAGAGTCTAGTTACTCCGGGCAAGGTTGTT 999
|||||||| || || | ||||||||||||| | ||||| ||||||| ||||| ||||
Sbjct 688 CAGGTACC-ATTACC-CATTCCTCCGGCAAGATATTCTAGCAACTCCGGCCAAGGCTGTT 745
Query 1000 CAGGAGCGAGCAGCTCTAGTTCTTCCTAATCATAACTCTGCTTATT 1045
|||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 746 CAGGAGAGAGCAGCTCTAGTTCTTCCTAATCATAACTCTGCTTATT 791
> AT2G32645.1 | Symbols: | Domain of unknown function (DUF313)
| chr2:13851667-13853343 REVERSE LENGTH=1376
Length=1376
Score = 457 bits (247), Expect = 1e-127
Identities = 464/562 (83%), Gaps = 41/562 (7%)
Strand=Plus/Plus
Query 342 GTACTACAAAACCCTAATCTGGGTTTAGAGTCTTCTCCT-TCTTCTTACGTTAGTC-GTC 399
|||||| |||||||||||| || || | |||| ||| | || |||| | | ||| |||
Sbjct 307 GTACTAGAAAACCCTAATCCGGATTCACAGTCGTCT-ATGTCATCTT--G-T-GTCAGTC 361
Query 400 -GTTCCAAGGAAAAAC---GTCCCATTAACGTGGAAAAGAGAAGTCGAAAGAAACGCAAA 455
| |||||| |||||| || | |||| |||||| ||||| ||| |||||| |||||
Sbjct 362 AG-TCCAAGAAAAAACGTTGTTCTGTTAAGGTGGAAGAGAGACGTCCCAAGAAAGGCAAA 420
Query 456 GTCGTTAGTCCTTTAGAGGTGGAACC-AATTCAAACAACTCCATCGGAGTGGCTTTTGAA 514
||||||||||||||||||||| |||| ||||||||| |||||| | || |||||||||||
Sbjct 421 GTCGTTAGTCCTTTAGAGGTGCAACCAAATTCAAACGACTCCACCCGATTGGCTTTTGAA 480
Query 515 CGTGATGAGGAGAGAAGAGAACGGCTACAATCCGAAGCTGATCTCAACGAGGCAACTCTT 574
||| |||| | || | ||||| |||||||||||||||||||||||||||||| || | ||
Sbjct 481 CGTTATGA-G-GA-ACGAGAATGGCTACAATCCGAAGCTGATCTCAACGAGGGAATTGTT 537
Query 575 TCAGACTGATCTC-AGAACACACCAAGCACGTCTCTCA-GTACCCTTT-AAGCAGGTTAT 631
| || |||||||| | || | ||||||||||| || || |||||| || || || |
Sbjct 538 TAAGTCTGATCTCGATAA-AGGTAAAGCACGTCTC-CAAGT-CCCTTTTAACCAAGTGAA 594
Query 632 CAA-TCCGGACTTTTTGACAGAGAATGAGACAAGAATCATAAATGAAAATGCCATGAAGA 690
|| ||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||
Sbjct 595 -AACTCCGGACTTTTTGACAGAGGACGAGACAAGAATCATACATGAAAATGCCATGAAGA 653
Query 691 TTCGTGACGATGGTGTGAGTGTGGATTTGGTGGATCCTA--ATCGGAAGAAGCATGAGCT 748
||||||||||||||||| |||| |||||||||||||| || | || ||||||| |||
Sbjct 654 TTCGTGACGATGGTGTGCCTGTGAATTTGGTGGATCCTCGGAT-G-AATAAGCATGCGCT 711
Query 749 TGAGTTGAGGAAGTGGAAGATGA-GTGGAAACTGGTATTATAACTTTGTTAAAGGTTGGA 807
||||||||||||||||||||||| | ||||||||| ||||| |||||||||||||||||
Sbjct 712 TGAGTTGAGGAAGTGGAAGATGAAG-GGAAACTGGAATTATGTCTTTGTTAAAGGTTGGA 770
Query 808 AAAATGTGCTTGATGCTAATA-G-C---TT--T--AAG-AAAGAAGACGTCTACCCTCTC 857
| |||||||||||||||| | | | || | ||| ||| ||||||||| ||||||
Sbjct 771 ACGATGTGCTTGATGCTAACAAGTCGAATTCGTTTAAGGAAA-AAGACGTCTTTCCTCTC 829
Query 858 TGGTCTTTCCGATCTGGAACAG 879
||||||||||||||||||||||
Sbjct 830 TGGTCTTTCCGATCTGGAACAG 851
> AT2G32905.1 | Symbols: | Domain of unknown function (DUF313)
| chr2:13958449-13959066 FORWARD LENGTH=618
Length=618
Score = 222 bits (120), Expect = 5e-57
Identities = 209/252 (83%), Gaps = 6/252 (2%)
Strand=Plus/Plus
Query 429 GAAAAGAGAAGTCGAAAGAAACGCAAAGTCGTTAGTCCTTTAGAGGTGGAACCAATTCAA 488
||| |||| | ||| |||| || |||| ||| ||||||||||||||||||||||||||||
Sbjct 352 GAAGAGAGTACTCGCAAGAGACTCAAAATCGATAGTCCTTTAGAGGTGGAACCAATTCAA 411
Query 489 ACAACTCCATCGGAGTGGCTTTTGAACGTGATGAGGAGAGAAGAGAACGGCTACAATCCG 548
||| | ||| |||| ||||||||||| || |||| ||||||||||||| ||||||||||
Sbjct 412 ACATCACCACCGGAATGGCTTTTGAAAGTAATGAAGAGAGAAGAGAACAGCTACAATCCA 471
Query 549 AAGCTGATCTCAACGAGGCAACTCTTTCAGACTGATCTCAGA-ACACACCAAGCACGTCT 607
|| ||||||||||||| |||||| | ||||||||||| | | | |||||||||||
Sbjct 472 AAATTGATCTCAACGAGAAAACTCTATAAGACTGATCTC-GCTAGTCTTCAAGCACGTCT 530
Query 608 CTCAGTACCCTTTAAGCAGGTTATCAA-TCCGGACTTTTTGACAGAG-AATGAGACAAGA 665
||||||||| ||||| || || | || ||| |||||||| |||||| || || ||||||
Sbjct 531 CTCAGTACCTTTTAAACAAGTGAA-AAGTCCAGACTTTTTAACAGAGGAA-GAAACAAGA 588
Query 666 ATCATAAATGAA 677
|||||||| |||
Sbjct 589 ATCATAAAGGAA 600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51389532381
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5