BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933782
Length=235
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32210.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 254 3e-67
AT2G32190.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 213 6e-55
> AT2G32210.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G32190.1);
Has 214 Blast hits to 214 proteins in 21 species: Archae -
0; Bacteria - 0; Metazoa - 1; Fungi - 10; Plants - 203; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:13677986-13678830
FORWARD LENGTH=583
Length=583
Score = 254 bits (137), Expect = 3e-67
Identities = 208/238 (87%), Gaps = 21/238 (9%)
Strand=Plus/Plus
Query 14 TTCGAAGATGAGCCAATACAGCC--AA--AA-C--CA--AGCTTATCCTACGCCACCAGT 64
||| |||||||| |||||||||| || || | || ||||||||||||||| |||||
Sbjct 85 TTCCAAGATGAGTCAATACAGCCAAAACCAATCTTCAGGAGCTTATCCTACGCCGCCAGT 144
Query 65 GTCTACCGGCCCTTACGTGGCACCACCACCGCTAGGTTACCCAACGAACGACACAAGTCA 124
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 145 GTCTACCGGCCCTTACGTGGCACCGCCACCGCTAGGTTACCCAACGAACGACACAAGTCA 204
Query 125 TGCCACGGTGGCTCCGGTGGAGACAAAGTCCAAGGGTGATGGA--C--A------T--CT 172
|||||||||||| ||||||||||||||||||||||||||||| | | | ||
Sbjct 205 TGCCACGGTGGCAACGGTGGAGACAAAGTCCAAGGGTGATGGATTCTTAAAAGGCTGTCT 264
Query 173 TGCGGCCATGTGTTGTTGTTGTGTCCTCGACGCATGCTTCTGAGGACATCGATGGTTT 230
||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct 265 TGCGGCCATGTGTTGTTGTTGTGTCCTCGACGCATGCTTCTGAAGACTTAGATGGTTT 322
> AT2G32190.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G32210.1);
Has 218 Blast hits to 218 proteins in 24 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 16; Plants - 202; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:13674498-13675286
FORWARD LENGTH=500
Length=500
Score = 213 bits (115), Expect = 6e-55
Identities = 198/233 (85%), Gaps = 25/233 (11%)
Strand=Plus/Plus
Query 6 ATAATCAT-TTCGAAGATGAGCCAATACAGCC--AA--AA-C--CA--AGCTTATCCTAC 55
|||||| | ||||||||||||||||||||||| || || | || ||||||||||||
Sbjct 76 ATAATC-TGTTCGAAGATGAGCCAATACAGCCAAAACCAATCTTCAGGAGCTTATCCTAC 134
Query 56 GCCACCAGTGTCTACCGGCCCTTACGTGGCACCACCACCGCTAGGTTACCCAACGAACGA 115
||| |||||||||||||||||||| || |||| |||||||| |||||||| |||| |||
Sbjct 135 GCCGCCAGTGTCTACCGGCCCTTATATGACACCGCCACCGCTCGGTTACCCGACGAGCGA 194
Query 116 CA-CAAGTCATGCCACGGTGGCTCCGGTGGAGACAAAGTCCAAGGGTGATGGA--C---A 169
|| | |||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 195 CATC-AGTCATGCCACGGTGGCTCCGGTGGAGACAAAGTCCAAGGGTGATGGATTCTTGA 253
Query 170 -----T--CTTGCGGCCATGTGTTGTTGTTGTGTCCTCGACGCATGCTTCTGA 215
| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 254 AAGGCTGTCTTGCGGCCATGTGTTGCTGTTGTGTCCTCGACGCCTGCTTCTGA 306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10606495039
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5