BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933783

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G32220.1 | Symbols:  | Ribosomal L27e protein family | chr2:...   627    3e-179


> AT2G32220.1 | Symbols:  | Ribosomal L27e protein family | chr2:13678919-13679523 
FORWARD LENGTH=605
Length=605

 Score =  627 bits (339),  Expect = 3e-179
 Identities = 395/422 (94%), Gaps = 4/422 (1%)
 Strand=Plus/Plus

Query  17   GACAATGGTGAAATGTATGAAGCCAGGGAAAGCTGTGATCCTCCTACAAGGTCGATACGC  76
            ||||||||||||||||||||||||||| ||||| ||||||||  ||||||| |||||| |
Sbjct  23   GACAATGGTGAAATGTATGAAGCCAGGAAAAGCCGTGATCCTTTTACAAGGACGATACAC  82

Query  77   CGGTAAAAAGGCAGTGATCGTGAAATCCTTCGACGACGGTACCGATGAGAA-ACGCTACG  135
            |||||||||||| |||||||||||||||||||| |||||||||| |||||| | | ||||
Sbjct  83   CGGTAAAAAGGCGGTGATCGTGAAATCCTTCGATGACGGTACCGTTGAGAAGAAG-TACG  141

Query  136  GTCACTGCCTCGTCGCCGGATTGAAGAAGTACCCAAGCAAAGTCATCCGCAAGGATTCGG  195
            ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  142  GTCACTGTCTCGTCGCCGGATTGAAGAAGTACCCAAGCAAAGTCATTCGCAAGGATTCGG  201

Query  196  CGAAGAAGACGGCTAAGAAATCGCGCGTGAAATGTTTCTTCAAGTTCGTCAATTACCAGC  255
            | |||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||
Sbjct  202  CAAAGAAGACGGCTAAGAAATCGCGCGTGAAATGCTTCTTCAAGGTCATCAATTACCAGC  261

Query  256  ACGTGATGCCTACGCGCTACACT-TTGGATTTGGATCTGAAGAACGTTGTCTCCGGCGAC  314
            ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||
Sbjct  262  ACGTGATGCCTACGCGCTACACTCTTG-ATTTGGATCTGAAGAACGTTGTCTCCGCCGAC  320

Query  315  GCGATCTCGTCCAATGATAAGAAAGTGACGGCTCTCAAGGAAGCGAAGTCGCAGTTTGAA  374
            |||||||||||||| |||||||||||||||||||| |||||||||||| || ||||||||
Sbjct  321  GCGATCTCGTCCAAGGATAAGAAAGTGACGGCTCTTAAGGAAGCGAAGGCGAAGTTTGAA  380

Query  375  GAGAGGTTTAAGACTGGGAAGAACAGATGGTTCTTCTCCAAGCTTAGGTTTTGAATTCTA  434
            ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct  381  GAGAGGTTTAAGACTGGCAAGAACAGATGGTTCTTCACCAAGCTTAGGTTTTGAATTCTA  440

Query  435  CA  436
            ||
Sbjct  441  CA  442



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21313525576


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5