BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933791

Length=308
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G32275.1 | Symbols:  | Expressed protein | chr2:13709604-137...   228    3e-59


> AT2G32275.1 | Symbols:  | Expressed protein | chr2:13709604-13710356 
FORWARD LENGTH=638
Length=638

 Score =  228 bits (123),  Expect = 3e-59
 Identities = 259/317 (82%), Gaps = 40/317 (13%)
 Strand=Plus/Plus

Query  1    TTTTAAGTAATCGAGTTTCAAATGATTTTTTCTCTATTTCGTCGATGTTGCCGTTCCACC  60
            ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  65   TTTTAAGTAGTCGAGTTTCAAATGATTTTTTCTCTATTCCGTCGATGTTGCCGTTCCACC  124

Query  61   TCCGCCGTC-----C-AGCCAACGGT-GG---TG-C--A--TGTCTCAGGTGACTCAGTT  105
            ||||| ||      | ||||| || | ||   || |  |  |||||||||||||||||||
Sbjct  125  TCCGCTGTGATTGACGAGCCATCGCTAGGCCATGACTCAAGTGTCTCAGGTGACTCAGTT  184

Query  106  -GTCTCA-AGTGACTCAGTTGACTCAGGTGTCTCAG--G--TCA-----CTCAGCAGAGC  154
             | |||| | || ||||||||||||||||||||||   |  |||     |||||||| ||
Sbjct  185  CG-CTCAGA-TGTCTCAGTTGACTCAGGTGTCTCAACTGACTCAGGTGACTCAGCAGCGC  242

Query  155  CTAAACGCTGGAGGCCGTCTTTACCTCCAATATTGGAAGGTGACGAAACCGAGAGAGACC  214
            ||| ||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct  243  CTACACGGTGGAGTCCGTCTTTACCTCCGATATTGGAAGGTGACGAAACCGAGAGTGACC  302

Query  215  ACCAAAATGACCACCAAATTGCGAGAGTCTCACATGCTTGGTCGTTAAACCAATTACTGA  274
            |||||||   |       |  ||||||||||||||||||||| ||||||| |||||||||
Sbjct  303  ACCAAAA---C-------T--CGAGAGTCTCACATGCTTGGTGGTTAAACAAATTACTGA  350

Query  275  AGAGATTCAGATAATTT  291
            |||||||| ||| ||||
Sbjct  351  AGAGATTCCGATGATTT  367



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14276040716


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5