BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933796

Length=583
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G32310.1 | Symbols:  | CCT motif family protein | chr2:13724...   614    4e-175


> AT2G32310.1 | Symbols:  | CCT motif family protein | chr2:13724394-13726374 
FORWARD LENGTH=1262
Length=1262

 Score =  614 bits (332),  Expect = 4e-175
 Identities = 429/475 (90%), Gaps = 10/475 (2%)
 Strand=Plus/Plus

Query  32   TTATGATGAGATAG-GCGAATTTCTGGAGATATTATATGGAGAACGTGAGACACCATCGT  90
            |||||||||||||| | || |||||  ||||| | |  |||||||  ||||||||| |||
Sbjct  147  TTATGATGAGATAGAG-GATTTTCTCAAGATA-T-T-CGGAGAACCAGAGACACCAGCGT  202

Query  91   TATTAGGAGATGCAGAAACGACACGTCCGTTGAACATCAATGCTCGTCCCGAGCCTTTAC  150
            || ||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||
Sbjct  203  TACTAGGAGATGCAGAAACGACACTTCCGTTGAACATCAATCCTCGTCCCGAGCCTGTAC  262

Query  151  CATCTCAAGTTCAAGACCAACCACCGCGACCACAACTGTCGTTATCGTCTAGATCACATG  210
            |||||||| ||||| |||||||||||| |||||||||| ||||||||||||| | ||| |
Sbjct  263  CATCTCAATTTCAATACCAACCACCGCCACCACAACTGCCGTTATCGTCTAGTTTACACG  322

Query  211  ATATACAAGATCTTGATGATCAGTCTAGGCTATTTGGATACAACGAGCCTAATGTTTCTT  270
             ||||||||||| |  |||||||||||||| |||||||||||||||||| ||||||||||
Sbjct  323  CTATACAAGATC-T--TGATCAGTCTAGGCAATTTGGATACAACGAGCCAAATGTTTCTT  379

Query  271  TATGTGAAACAAGGAACAGGACTGCTCAGTTTCAACGTGGACACTCTCAATCTCAGGAAC  330
            ||||||||||||| ||||| ||||||||||||||||||||||||| ||| | ||||||||
Sbjct  380  TATGTGAAACAAGCAACAGAACTGCTCAGTTTCAACGTGGACACTTTCACTATCAGGAAC  439

Query  331  TAAACACACCATTTG-AAGCAGAGAGCGTAAATTCTTTATTTGCATCCACTGAAACGGAC  389
            ||||||||||||||| || |||||||| ||||||||||||| || ||||||||| || ||
Sbjct  440  TAAACACACCATTTGCAA-CAGAGAGCTTAAATTCTTTATTGGCCTCCACTGAAGCGAAC  498

Query  390  CAGAACTTATACACAGTGCCACCACATAATTTCGGATATGGTGAGCCCATTGGTTCTTTA  449
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  499  CAGAACTTATACACAGTGCCACCACATAATTTCGGATATGGTGAGCCCATTGGTTCTTTA  558

Query  450  TGTGAAACTAGTAATAGGACTTATCAGCTTCAACGTGGACACTCTCAATCTCAGG  504
            | |||||||||||| || ||||||||||||||||||||||||||||| | |||||
Sbjct  559  TATGAAACTAGTAACAGAACTTATCAGCTTCAACGTGGACACTCTCACTATCAGG  613



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28030654026


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5