BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933797

Length=335
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G32320.2 | Symbols:  | tRNAHis guanylyltransferase | chr2:13...   518    2e-146


> AT2G32320.2 | Symbols:  | tRNAHis guanylyltransferase | chr2:13726819-13731767 
FORWARD LENGTH=2165
Length=2165

 Score =  518 bits (280),  Expect = 2e-146
 Identities = 318/336 (95%), Gaps = 3/336 (1%)
 Strand=Plus/Plus

Query  1     CAGTACAATACAT-TTTTTGGATGCTTGTTAAGTCTGGAAAAAGCAAAACTCAAGCCCAA  59
             ||||| ||||||| ||| ||||||||||||||||||||||||||||||| ||||||||| 
Sbjct  1512  CAGTATAATACATGTTTCTGGATGCTTGTTAAGTCTGGAAAAAGCAAAATTCAAGCCCAG  1571

Query  60    GATTACTTAAAGGGTACCCAAACACGAGaaaaaaaTGAGTTACTTAGCCAGCAATTTGGA  119
             |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct  1572  GATTACTTAAAGGGTACCCAGACACGAGAAAAAAACGAGTTACTTAGCCAGCAATTTGGA  1631

Query  120   ATTGAGTACAATTCATTACCTGTAATCTTCCGCCTGGGGTCTTCCGTTTTCCGCCTAAAG  179
             ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct  1632  ATTGAGTACAATTCATTACCTGTAATCTTCCGCATGGGTTCTTCCGTTTTCCGCCTAAAG  1691

Query  180   ACGCAGGAAGGTGTTGCAGAGGAGAATGGAGAAGTTTCAGGAAAGCAAGTGGAAGCAGAA  239
             ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1692  ACGCAGGAAGGTGTTACAGAGGAGAATGGAGAAGTTTCAGGAAAGCAAGTGGAAGCAGAA  1751

Query  240   GTGGTTGTAGACTACTCTAACATTATCGACCAATGTTTCTGGCAACAACATCCTCACATT  299
             ||||  |||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1752  GTGGGCGTAGACTATTCAAACATTATCGACCAATGTTTCTGGCAACAACATCCTCACATT  1811

Query  300   CTTAGCTGCTCCTAACACAAAGGTATTCATTGCTAC  335
             ||||||| ||||||| |||  |||||||||||||||
Sbjct  1812  CTTAGCTTCTCCTAAGACA--GGTATTCATTGCTAC  1845



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15633269939


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5