BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933800
Length=637
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32350.1 | Symbols: | Ubiquitin-like superfamily protein | ... 883 0.0
> AT2G32350.1 | Symbols: | Ubiquitin-like superfamily protein
| chr2:13734945-13735788 FORWARD LENGTH=763
Length=763
Score = 883 bits (478), Expect = 0.0
Identities = 540/570 (95%), Gaps = 3/570 (1%)
Strand=Plus/Plus
Query 1 TTGTTTCATATACACAAGAATTCACCATGGAAATCAGTGAACAAGAATCTGTGTTGGAGG 60
|||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 9 TTGTTTCATACACACAAGAATTCACAATGGAAATCAGCGAACAAGAATCTGTGTTGGAGG 68
Query 61 TCAAGAAACGTTTAGGACAGTTTCTTCAGATCCCAGCATCTTCTTTAACTCTCTTTGTCT 120
||||||||||| ||||||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct 69 TCAAGAAACGTCTAGGACAGTTTCTTCAGATACCAACATCTTCTATAACTCTCTTTGTCT 128
Query 121 CTTGTTGGGAACTCATCGACGGTCTTGACATCGAAGATTACCCAATCATCTCTCACGGCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 CTTGTTGGGAACTCATCGACGGTCTTGACATCGAAGATTACCCAATCATCTCTCACGGCA 188
Query 181 CCAGAATCGACCTCACCGTAACTCCCTTTTTCACCGCACCGTCTTTTATCAAC-CCGGCC 239
|||||||||||||||||||||||||| ||||||||||||||||||||||| || ||| ||
Sbjct 189 CCAGAATCGACCTCACCGTAACTCCCCTTTTCACCGCACCGTCTTTTATCCACGCCG-CC 247
Query 240 GTTAGAAAAATCCACGTCACCGTCAAGTTCCCGTCAAAACAGTTCACCGTTGAAGTAGAC 299
||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 248 GTTAGGAAAATTCACGTCACCGTCAAGTTCCCGTCAAAACAGTTCACCGTCGAAGTAGAC 307
Query 300 AGAACCGAAACGGTAAGTAGCTTGAAGGACAAGATTCACATTGTGGAGAACACACCGATA 359
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 308 AGAACCGAAACGGTAAGTAGCTTAAAGGACAAGATTCACATTGTTGAGAACACACCGATA 367
Query 360 AAGCGAATGCAGTTATACTATTCCGGGATTGAGCTAGCTGATGATTATCGAAACCTAAAC 419
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 368 AAGCGAATGCAGTTATACTATTCTGGGATCGAGCTAGCTGATGATTATCGAAACCTAAAC 427
Query 420 GAATATGGAATCAGTGAATTCTCAGAGATTGTGGTGTTTCTCAAGTCGATCAACCGAGCC 479
||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 428 GAATATGGAATCACAGAATTCTCAGAGATTGTGGTGTTTCTTAAGTCAATCAACCGTGCG 487
Query 480 AAAGACGTTGCTCCGGTGAGGAAACTCTGTTTCTTGGTGCAGACGTCATCGAGTTTATTC 539
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 AAAGACGTCGCTCCGGTAAGGAAACTCTGTTTCTTGGTGCAGACGTCATCGAGTTTATTC 547
Query 540 AACGGTGCGAGGATTCCTGTGGAGAT-AAG 568
||||||||| | ||||| |||||||| |||
Sbjct 548 AACGGTGCGCGAATTCCAGTGGAGATTAAG 577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30743297964
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5