BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933809
Length=1270
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32430.1 | Symbols: | Galactosyltransferase family protein ... 2015 0.0
AT1G05170.2 | Symbols: | Galactosyltransferase family protein ... 1149 0.0
> AT2G32430.1 | Symbols: | Galactosyltransferase family protein
| chr2:13771296-13774502 FORWARD LENGTH=1960
Length=1960
Score = 2015 bits (1091), Expect = 0.0
Identities = 1210/1268 (95%), Gaps = 6/1268 (0%)
Strand=Plus/Plus
Query 7 TGAAGAGAA-AAATAATGTCGACGAAGATCAAAGGAGAGCTTTTTTCGTCCAGAAGCTTA 65
||||||||| ||||||||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 316 TGAAGAGAATAAATAATGTCGACGAAGATCAAAGGAGAGCTTTTTCCCTCCAGAAGTTTA 375
Query 66 GTATCCAAGAAATGGACATTTTTACTCTGCTTTGGGAGCTTCTGCTTTGGGATACTCTTC 125
||||| || |||||||||||||||||||||||||||||||||||||| || ||| | |||
Sbjct 376 GTATCTAAAAAATGGACATTTTTACTCTGCTTTGGGAGCTTCTGCTTCGGAATATTATTC 435
Query 126 ACCGATAGGATGTGGATTATTCCAGAGTCTAAAGACATGTCTCGACCATCTGTAAGTACA 185
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 436 ACCGATAGGATGTGGATTATTCCGGAGTCTAAAGACATGCCTCGACCATCTGTAAGTACA 495
Query 186 GAAGCTGAAAGACTT-AAGCTGATCTCTGAGGGCTGTGATCCCAAAAATCTCTACCAGAA 244
|||||||||||| || |||||||||||||||||||||||||| |||| |||||||||||
Sbjct 496 GAAGCTGAAAGA-TTGAAGCTGATCTCTGAGGGCTGTGATCCGAAAACCCTCTACCAGAA 554
Query 245 AGAAGTAAATCGTGATCCTCAGGCTTTGCTTGGAGAAGTTTCCAAGACTCATAATGCTAT 304
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||
Sbjct 555 AGAAGTAAATCGTGATCCTCAGGCATTGTTTGGAGAAGTTTCCAAGACTCATAACGCTAT 614
Query 305 ACAGACATTGGATAAGACCATTTCAAGTTTAGAGATGGAGTTAGCCGCAGCAAGATCAGC 364
|||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 615 ACAGACATTGGATAAGACTATTTCAAGCTTAGAGATGGAGTTAGCTGCAGCAAGATCGGC 674
Query 365 ACAGGAGTCTTTGA-TAAACGGTGCTCCTATGTCGAATGATGTGGAGAAGAAGCAATTAC 423
||||||||||| | |||||||||||||||| || |||||| ||||||||||||||||||
Sbjct 675 TCAGGAGTCTTT-AGTAAACGGTGCTCCTATATCTAATGATATGGAGAAGAAGCAATTAC 733
Query 424 CGGGGAAAAGACGGTATTTGATGGTTGTAGGGATTAATACTGCTTTTAGTAGCCGAAAGA 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 CGGGGAAAAGACGGTATTTGATGGTTGTAGGGATTAATACTGCTTTTAGTAGCCGAAAGA 793
Query 484 GAAGAGATTCTGTTCGAACAACTTGGATGCCTTCAGGTGAGAAAAGAAAGAAGTTAGAGG 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 794 GAAGAGATTCTGTTCGAACAACTTGGATGCCTTCAGGTGAGAAAAGAAAGAAGTTGGAAG 853
Query 544 AAGAGAAGGGAATTATTATACGGTTTGTGATTGGTCATAGTGCCACCGCCGGCGGAATTC 603
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 854 AAGAGAAGGGAATTATTATACGGTTTGTGATTGGTCATAGTGCCACGGCTGGCGGAATTC 913
Query 604 TAGACCGATCCATTGAAGCAGAGGATAGGAAGCATGGAGATTTCTTGAGATTGGACCATG 663
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 914 TAGACCGATCCATTGAAGCAGAGGACAAGAAGCATGGAGATTTCTTGAGATTGGACCATG 973
Query 664 TTGAAGGATACCTTGAGTTATCAGGCAAAACGAAAACATATTTTTCTACCGCTGTTTCAA 723
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 974 TTGAAGGATACCTTGAGTTATCAGGCAAAACGAAAACATATTTTTCTACAGCTGTTTCGA 1033
Query 724 AGTGGGATGCAGAATTCTATGTCAAAGTAGATGATGATGTTCATGTAAATATCGCAACTC 783
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 AGTGGGATGCAGAGTTCTATGTCAAAGTAGATGATGATGTTCATGTAAATATCGCAACTC 1093
Query 784 TTGGGGAGACTCTTGTCAGACACAGGAAGAAACATCGAGTCTATATCGGCTGCATGAAAT 843
||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1094 TTGGGGAAACTCTTGTTAGACACAGGAAGAAACATCGAGTCTATCTCGGCTGCATGAAAT 1153
Query 844 CTGGTCCAGTCCTATCTCAAAAAGGAGTTAGATACCATGAGCCTGAATATTGGAAATTTG 903
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1154 CTGGTCCAGTACTATCTCAAAAAGGAGTTAGATACCATGAGCCTGAGTATTGGAAATTTG 1213
Query 904 GTGAGAATGGAAACAAGTACTTCCGTCACGCTACTGGACAGTTATACGCCATTTCAAGAG 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1214 GTGAGAATGGAAACAAGTACTTCCGTCACGCTACTGGACAGTTATACGCCATTTCTAGAG 1273
Query 964 ACTTGGCTTCTTACATTGCCCTTAATCAGCATGTTCTGCACAAATATGCAAATGAGGATG 1023
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1274 ACTTGGCTTCTTACATTTCCCTTAATCAGCATGTTCTGCACAAATATGCAAATGAGGATG 1333
Query 1024 TTACATTAGGTGCTTGGTTTATCGGGCTTGATGTTACACATATCGATGATAGAAGACTAT 1083
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1334 TTACATTAGGTGCTTGGTTTATCGGGCTTGATGTGACACATATCGATGATAGAAGACTAT 1393
Query 1084 GTTGCGGCACTCCTCCGGATTGTGAATGGAAGGCACAAGCAGGCAACATATGTGTAGCTT 1143
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1394 GTTGTGGCACTCCTCCTGATTGTGAATGGAAGGCACAAGCAGGCAACATATGTGTAGCTT 1453
Query 1144 CATTTGACTGGACCTGTAGTGGTATCTGCAGATCAGCTGATCGAATTAAAGAAGTTCACA 1203
|||| |||||||| ||||| ||||||||||||||||||||||| || ||||| |||||||
Sbjct 1454 CATTCGACTGGACGTGTAGCGGTATCTGCAGATCAGCTGATCGGATAAAAGAGGTTCACA 1513
Query 1204 AGCGATGTGGTGAACCAGAAAACGCTATTTGGAAAGCCAGATTTTGAGGCC-TTCCACAA 1262
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1514 AGCGATGTGGTGAACCGGAAAACGCTATTTGGAAAGCCAGATTTTGAGGCCCTTCCACTA 1573
Query 1263 CATATACA 1270
||||||||
Sbjct 1574 CATATACA 1581
> AT1G05170.2 | Symbols: | Galactosyltransferase family protein
| chr1:1491164-1494248 REVERSE LENGTH=1837
Length=1837
Score = 1149 bits (622), Expect = 0.0
Identities = 1050/1252 (84%), Gaps = 48/1252 (4%)
Strand=Plus/Plus
Query 20 AATGTC-GACGAAGATCAAAGGAGAGCTTTTTTCGTCCAGAAGCTTAGTATCCAAG-AAA 77
|||||| | ||||||||||||||||| | ||| || |||||||| |||| | || |||
Sbjct 317 AATGTCTG-CGAAGATCAAAGGAGAG---TATTCTTCTAGAAGCTTCGTAT-CGAGAAAA 371
Query 78 TGGAC-ATTTTTACTCTGCTTTGGGAGCTTCTGCTTTGGGATACTCTTCACCGATAGGAT 136
||||| | | ||||||||||| || ||||||||| | || || |||||||| || ||||
Sbjct 372 TGGACGA-TATTACTCTGCTTAGGAAGCTTCTGCGTCGGAATGTTCTTCACCAATCGGAT 430
Query 137 GTGGATTATTCCAGAGTCTAAAGACATGTCTCGA-CCATCTGTAAGTACAGAAGCTGAAA 195
||||| |||||| || ||||||| |||||||| | |||||||| | || |||||||| |
Sbjct 431 GTGGAATATTCCGGAATCTAAAGGCATGTCTC-ATCCATCTGT-A--ACCGAAGCTGAGA 486
Query 196 GACTT-AAGCTGATCTCTGAGGGCTGTGATCCCAAAA-ATCTCTACCAGAAAGAAGT-AA 252
|| || |||||| ||||||| ||||| || |||||| ||| |||||||||||||| ||
Sbjct 487 GA-TTGAAGCTGGTCTCTGAAGGCTGCAAT-CCAAAAGCTCTTTACCAGAAAGAAGTCAA 544
Query 253 ATCGTGATCCTCAGGCTTTGCTTGGAGAAGTTTCCAAGACTCATAATGCTA-TACAGACA 311
| | ||||||||||||||| |||||||||| |||| || |||| ||| | ||||||||
Sbjct 545 A-AGAGATCCTCAGGCTTTGTTTGGAGAAGTAGCCAATACACATATTGC-ATTACAGACA 602
Query 312 TTGGATAAGACCATTTCAAGTTTAGAGATGGAGTTAGCCGCAGCAAGATCAGCACAGGAG 371
|||||||||||||||||||| ||||||||||||||||| |||||||| |||| |||||
Sbjct 603 TTGGATAAGACCATTTCAAGCTTAGAGATGGAGTTAGCTGCAGCAAGGTCAGTTCAGGAA 662
Query 372 TCTTTGA-TAAACGGTGCTCCTATGTCGA-ATGATGTGGAGAAGAAGCAATTACC-GGGG 428
||||| | ||||||||||||| | || | ||||| ||| |||||||| | ||| ||
Sbjct 663 TCTTT-ACAAAACGGTGCTCCTTTATC-AGATGATATGGGGAAGAAGC-A--ACCTCAGG 717
Query 429 AA-A-AGACGGTATTTGATGGTTGTAGGGATTAATACTGCTTTTAGTAGCCGAAAGAGAA 486
|| | ||||||| ||||||||| || ||||||||||| |||||||||||| |||||||||
Sbjct 718 AACAGAGACGGTTTTTGATGGTCGTTGGGATTAATACAGCTTTTAGTAGCAGAAAGAGAA 777
Query 487 GAGATTCTGTTCGAACAACTTGGATGCCTTC-AGGTGAGAAAAGAAAGAAG-TTAGAGGA 544
|||||||| ||||| ||||||||||||| || |||||| ||||| ||| || |||| ||
Sbjct 778 GAGATTCTATTCGAGCAACTTGGATGCC-TCAAGGTGAAAAAAGGAAG-AGACTAGAAGA 835
Query 545 AGAGAAGGGAATTATTATACGGTTTGTGATTGGTCATAGTGCCACCG-CCGGCGGAATTC 603
|||||||| ||||| || |||||||| |||||||| ||||||| || |||| |||||||
Sbjct 836 GGAGAAGGGGATTATCATCCGGTTTGTCATTGGTCACAGTGCCA-CGACCGGGGGAATTC 894
Query 604 TAGACCGATCCATTGAAGCAGAGGATAGGAAGCATGGAGATTTCTTGAGATTGGACCATG 663
|||| ||| | || ||||| ||||| |||||||||||||||||||||||| |||||||||
Sbjct 895 TAGATCGAGCTATAGAAGCTGAGGACAGGAAGCATGGAGATTTCTTGAGACTGGACCATG 954
Query 664 TTGAAGGATACCTTGAGTTATCAGGCAAAACGAAAACATATTTTTCTACCGC-TGTTTCA 722
||||||| ||||| ||||| |||||||| |||||||| || |||||||| || | ||||
Sbjct 955 TTGAAGGGTACCTAGAGTTGTCAGGCAAGACGAAAACTTACTTTTCTACAGCAT-TTTCG 1013
Query 723 AAGTGGGATGCAGAATTCTATGTCAAAGTAGATGATGATGTTCATGTAAATATCGCAACT 782
| |||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1014 ATGTGGGATGCAGATTTCTATGTCAAAGTAGATGATGATGTTCATGTCAATATAGCAACT 1073
Query 783 CTTGGGGAGACTCTTGTCAGACACAGGAAGAAAC-ATCGAGTCTATATCGGCTGCATGAA 841
|||||||| |||||||| |||||| |||| |||| | || |||||||| || ||||||||
Sbjct 1074 CTTGGGGAAACTCTTGTTAGACACCGGAAAAAACCA-CGGGTCTATATTGGTTGCATGAA 1132
Query 842 ATCTGGTCCAGTCCTATCTCAAAAAGGAGTTAGATACCATGAGCCTGAATATTGGAAATT 901
|||||| || ||||| ||||||||||| || || ||||||||||| || || ||||| ||
Sbjct 1133 ATCTGGCCCTGTCCTCTCTCAAAAAGGGGTGAGGTACCATGAGCCAGAGTACTGGAAGTT 1192
Query 902 TGGTGAGAATGGAAACAAGTACTTCCGTCACGCTACTGGACAGTTATACGCCATTTCAAG 961
|||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1193 TGGTGAAAATGGGAACAAATACTTCCGTCATGCTACTGGACAGTTATACGCCATTTCAAG 1252
Query 962 AGACTTGGCTTCTTACAT-TGCCCTTAATCAGCATGTTCTGCACAAATATGCAAATGAGG 1020
|||||||||||||| || | | | |||||||||||||| ||||| ||||| || || |
Sbjct 1253 GGACTTGGCTTCTTATATAT-CAATCAATCAGCATGTTCTTCACAAGTATGCGAACGAAG 1311
Query 1021 ATGTTACATTAGGTGCTTGGTTTATCGGGCTTGATGTTACACATATCGATGATAGAAGAC 1080
||||| | |||| ||||||||||||||| ||||||||| ||| || ||||||||||||
Sbjct 1312 ATGTTTCGCTAGGAGCTTGGTTTATCGGGATTGATGTTAAACACATTGATGATAGAAGAT 1371
Query 1081 TATGTTGCGGCACTCCTCCGGATTGTGAATGGAAGGCACAAGCAGGCAACATATGTGTAG 1140
|||| ||||| |||||||| ||||| |||||||| |||||||| || ||||| |||||||
Sbjct 1372 TATGCTGCGGAACTCCTCCTGATTGCGAATGGAAAGCACAAGCTGGAAACATCTGTGTAG 1431
Query 1141 CTTCATTTGACTGGACCTGTAGTGGTATCTGCAGATCAGCTGATCGAATTAAAGAAGTTC 1200
| ||||| ||||||| ||| || || ||||||||||| || ||||| || ||||| ||||
Sbjct 1432 CATCATTCGACTGGAGCTGCAGCGGAATCTGCAGATCCGCAGATCGCATCAAAGAGGTTC 1491
Query 1201 ACA-AGCGATGTGGTGAACCAGAAAACGCTATTTGGAAAGCCA-GATTTTGA 1250
| | | || || |||||| ||||| ||| |||||| |||| | ||||||
Sbjct 1492 ATAGA-CGTTGCGGTGAAGGTGAAAAGGCTCTTTGGAGTGCCACG-TTTTGA 1541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62449477980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5