BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933819
Length=1160
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32510.1 | Symbols: MAPKKK17 | mitogen-activated protein kin... 1602 0.0
AT1G05100.1 | Symbols: MAPKKK18 | mitogen-activated protein kin... 551 6e-156
> AT2G32510.1 | Symbols: MAPKKK17 | mitogen-activated protein kinase
kinase kinase 17 | chr2:13798821-13799939 REVERSE LENGTH=1119
Length=1119
Score = 1602 bits (867), Expect = 0.0
Identities = 1041/1125 (93%), Gaps = 12/1125 (1%)
Strand=Plus/Plus
Query 22 ATGGAATGGACTAGAGGAAGAATCCTAGGCCGAGGCTCGACAGCCACCGTCTACGCCGCC 81
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1 ATGGAATGGACTAGAGGAAGAATCCTAGGCCGAGGCTCTACAGCCACCGTATACGCCGCC 60
Query 82 AC-GTGTCACAATTCAGATGAAATCCTCGCCGTTAAATCCTCCGAGCTTCACCACTCAGA 140
| | |||||||||||||||||||||||||||||||||| || ||| |||||| ||||||
Sbjct 61 GCAG-GTCACAATTCAGATGAAATCCTCGCCGTTAAATCATCTGAGGTTCACCGCTCAGA 119
Query 141 GTTCTTGCAAAGAGAAGCCAAGATTCTCTCGTCGTTGAA-TTCTCCTTACGTGATCGGAT 199
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 120 GTTCTTGCAAAGAGAAGCCAAGATTCTCTCGTCGTT-AAGTTCTCCTTACGTGATCGGAT 178
Query 200 ACAGAGGATCAGAAACCAAAAGAGAGTCAAACGGTGTCGTTACGTATAATATTTTGATGG 259
||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||
Sbjct 179 ACAGAGGATCAGAAACCAAGAGAGAGTCAAACGGTGTCGTTATGTATAATCTTTTGATGG 238
Query 260 AGTTCGCACCGTACGGAACGTTGACTGACGCGGCGGCGAAAAACGGAGGCAGAGTCGACG 319
||| ||||||||| ||||||||||| || |||||||||||| |||| || ||||||||||
Sbjct 239 AGTACGCACCGTATGGAACGTTGACCGATGCGGCGGCGAAAGACGGGGGAAGAGTCGACG 298
Query 320 AGACTCGGGTCGTGAAGTACACGCGCGAGATACTAAGAGGATTGGAGTATGTACACTCGA 379
|||||||||| ||||||||||||||||| ||||||| ||||||||||||| |||||||||
Sbjct 299 AGACTCGGGTAGTGAAGTACACGCGCGATATACTAAAAGGATTGGAGTATATACACTCGA 358
Query 380 AAGGTATCGTGCATTGCGATGTAAAGGGAAGTAACGTGGTTCTTGCGGAGAAAGGCGAGG 439
|||| ||||||||||| ||||||||||| |||||||||||| || |||||||||||||||
Sbjct 359 AAGGAATCGTGCATTGTGATGTAAAGGGTAGTAACGTGGTTATTTCGGAGAAAGGCGAGG 418
Query 440 CCAAAATTGCAGATTTCGGGTGTGCAAAACGGGTTGACCAAGAATTCGAGTCACCGGTTA 499
|||| ||||| ||||| || ||||| ||||||||||||| | |||||||| |||||||
Sbjct 419 CCAAGATTGCGGATTTTGGTTGTGCGAAACGGGTTGACCCGGTGTTCGAGTCGCCGGTTA 478
Query 500 TGGGAACGCCGGCGTTTATGGCTCCGGAGGTGGCGCGTGGGGAGAAACAGGGGAAGGAGA 559
||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 479 TGGGAACGCCGGCTTTTATGGCTCCAGAGGTGGCGCGTGGAGAGAAACAGGGGAAGGAGA 538
Query 560 GTGATATATGGGCGGTTGGGTGTACGGTGATTGAGATGGTTACGGGTTCTCCACCGTGGA 619
||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||
Sbjct 539 GTGATATATGGGCGGTTGGTTGTACGATGATAGAGATGGTTACGGGTTCTCCACCGTGGA 598
Query 620 CAG-AGGCGA-ATTCGAGGGAGGATCCGGTTTCGGTTCTTTATCGAGTCGGGTATTTGGG 677
| | |||| | |||||||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 599 C-GAAGGC-AGATTCGAGGGAGGATCCGGTTTCGGTTCTTTATCGGGTCGGGTATTCGAG 656
Query 678 TGCGACTCCGGAGCTTCCTTGTTTGCTTGCGGAAGAAGCAAAGGACTTTTTGGAAAAGTG 737
|| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 657 TGAAACTCCGGAGCTTCCTTGTTTGCTTGCGGAAGAAGCAAAAGATTTTTTGGAAAAGTG 716
Query 738 TTTGAAGAGGGAAGCAAAGGAGAGATGGACAGCGACACAACTCCTAAACCATCCGTTTTT 797
|||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 717 TTTGAAGAGGGAAGCAAATGAAAGATGGACAGCGACACAACTCCTAAACCATCCTTTTTT 776
Query 798 GACTACTAAACCGGACATTGAACCGGCTT-TGGTTTCCGGTTTGGTTTCAAGCTCACCGA 856
||| |||||||| ||||||||||| | || ||||| |||||||| |||||| ||||||||
Sbjct 777 GACAACTAAACCAGACATTGAACCAG-TTCTGGTTCCCGGTTTGATTTCAAACTCACCGA 835
Query 857 CAAGTGTGACAGATCAAACGTTTTGGAGATCAGCagaagaagaggaagaagaagaaACAG 916
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 836 CAAGTGTGACAGATCAAACGTTTTGGAGATCAGTAGAGGAAGAGGAAGAAGAAGAAACAG 895
Query 917 AGCAAATACAGAAGGATTCGAGAGATCTTGACCGTTTAAACTTGTGGGGTTGTTATTCGG 976
|| |||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||
Sbjct 896 AGGAAATACAGAAGGATTCGAGAGATCTTGATCGTTTAAGCTTGTGGGGTTGTTACTCGG 955
Query 977 AAAGGATCGGACGGCTG-AGATGTCTTGGTGGTTTGGATGGGACCAGATGGGATATGGAG 1035
| ||||||||||||||| || ||| ||||||||||||||||||||||||| |||||||||
Sbjct 956 AGAGGATCGGACGGCTGAAG-TGTGTTGGTGGTTTGGATGGGACCAGATGTGATATGGAG 1014
Query 1036 GGTGGGGATTGGATTACGGTGAGAGTGAGATGTGAAGGAACAATGATTAGTGGGTCACAT 1095
|||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1015 GGTGGGGATTGGATTATGGTGAGAGCGAGGTGTGAAGGAACAATGATTAGTGGGTCACAA 1074
Query 1096 GAGGAATTGATTATTAGTGAAAATGTATTGGTGGGGGAATTGTAA 1140
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 AAGGAATTGATTATTAGTGAAAATGTATTGGTGGGGGAATTGTAA 1119
> AT1G05100.1 | Symbols: MAPKKK18 | mitogen-activated protein kinase
kinase kinase 18 | chr1:1469610-1470881 FORWARD LENGTH=1272
Length=1272
Score = 551 bits (298), Expect = 6e-156
Identities = 727/924 (79%), Gaps = 69/924 (7%)
Strand=Plus/Plus
Query 14 TTCTCCAAATGGAA-TGGACTAGAGGAAGAATC-CTAGGCCGAGGCTCGACAGCCACCGT 71
|||||||||| ||| ||||||||||||| || | ||||||| ||||| || ||||||||
Sbjct 62 TTCTCCAAAT-GAATTGGACTAGAGGAA-AAACTTTAGGCCGTGGCTCAACGGCCACCGT 119
Query 72 CTACGCCGCCACGTGTCAC-AATTCAGATGAAATC-CTCGCCGTTAAATCCTCCGAGCTT 129
| ||||||||| |||||| || || | |||| | |||||||| |||||| ||||| ||
Sbjct 120 TTCCGCCGCCACTTGTCACGAA-TCCGGCGAAA-CACTCGCCGTAAAATCCGCCGAGTTT 177
Query 130 CACCACTCAGAGTTCTTGCAAAGAGAAGCCAAGATTCTCTCGTCGTTGAATTCTCCTTAC 189
|||| || |||||||||||||||||||||||||||||||| || || || ||||| |||
Sbjct 178 CACCGGTCGGAGTTCTTGCAAAGAGAAGCCAAGATTCTCTCCTCATTAAACTCTCCGTAC 237
Query 190 GTGATCGGATACAGAGGAT-CAGAAACCAAAAGAGAG---T-C-A-AAC---GGTGTCGT 239
|| |||||||||||||||| | |||| | |||||| | | | ||| || | |
Sbjct 238 GTCATCGGATACAGAGGATGC-GAAATTACGAGAGAGCCCTTCCACAACAACGGAGAAGC 296
Query 240 TACGTA-T-A-A-TATT-TTGATGGAGTTCGCACCGTACGGAACGTTGACTGACGCGGCG 294
|||| | | | | | || || ||||||| ||| ||||||||||||||||| |||| |||
Sbjct 297 TACG-ACTTACAGTCTTCTT-ATGGAGTACGCGCCGTACGGAACGTTGACCGACGTAGCG 354
Query 295 GCGAAAAACGGAGGCAG-AGTCGACGAGACTCGGGTCGTGAAGTACACGCGCGAGATACT 353
| || ||||| ||| | | |||||| ||||||||||||||||||||||| |||||||
Sbjct 355 ACCAAGAACGGCGGCTTCATT-GACGAGGCTCGGGTCGTGAAGTACACGCGCCAGATACT 413
Query 354 AAGAGGATTGGAGTATGTACA---CTCGAAAGGTA-TCGTGCATTGCGATGTAAAGGGAA 409
|| |||||||| | || ||| ||||| | | | ||||||||| | |||||||
Sbjct 414 TCTTGGGTTGGAGTACATTCATAACTC-AAAGGGAATTGCGCATTGCGACATTAAGGGAA 472
Query 410 GTAACGTGGTTCTTGCGGAGA-AA-GGCGAGGCCAAAATTGCAGATTTCGGGTGTGCAAA 467
| |||||| || | |||||| || || || ||||| || || |||||||||||||| ||
Sbjct 473 GCAACGTG-TTGGT-CGGAGAGAACGGAGAAGCCAAGATCGCTGATTTCGGGTGTGCGAA 530
Query 468 ACGGGTTGA-CCAAGAATTCGAGTC-A-CCGGTTATG-GGAACGCCGGCGTTTATGGCTC 523
| ||||||| || ||| | | | | ||||||| | |||||||||||||| |||||||
Sbjct 531 ATGGGTTGAACCG-GAAATA-AC-CGAACCGGTTA-GAGGAACGCCGGCGTTCATGGCTC 586
Query 524 CGGAGGTGGCGCGTGGGGAGAAACAGGGGAAGGAGAGTGATATATGGGCGGTTGGGT-GT 582
| || | ||||||||| |||| ||| ||||| |||||||||||||||||||| |||| ||
Sbjct 587 CAGAAGCGGCGCGTGGAGAGAGACAAGGGAAAGAGAGTGATATATGGGCGGT-GGGTTGT 645
Query 583 ACGGTGATTGAGATGGTTAC-GGGTTCTCCA-CCGTGGACAGAGGCGAATTCGAGGGAGG 640
|||||||| ||||||||||| |||| ||| | ||||||| | |||| ||| | ||
Sbjct 646 ACGGTGATAGAGATGGTTACCGGGT-CTC-AGCCGTGGATTGGGGCGGATTTTACCGAC- 702
Query 641 ATCCGGTTTCGGTTCTTTATCGAGTCGGGTATTTGGGTGCGACT-CCGGAGCTTCCTTGT 699
||||||||||||||||| || ||||| ||||| |||| | | || ||||| |||||
Sbjct 703 --CCGGTTTCGGTTCTTTACCGGGTCGGATATTTAGGTGAGT-TACCAGAGCTGCCTTGC 759
Query 700 TTGCTTGCGGAAGAAGCAAAGGACTTTTT-GGAAAAGTGTTTGAAGAGGGAAGCAAAGGA 758
| |||| ||||| |||||||||| ||||| ||||| ||||||||| | ||||| | |||
Sbjct 760 TCGCTTACGGAACAAGCAAAGGATTTTTTAGGAAA-GTGTTTGAAAAAAGAAGCGACGGA 818
Query 759 GAGATGGACAGCGACACAACTCCTAAACCATCCGTTTTTGACTACTAAACCGGACATTGA 818
|||||||||||||| ||||| |||||||||||||| ||| || |||| | | |
Sbjct 819 GAGATGGACAGCGAGTCAACTACTAAACCATCCGTTCTTGGTTAATAAA--G-A-A---- 870
Query 819 ACCGGCTTTGGTTTCCGGTTTGGTTTC-AAGCTCACCGACAAGTGTGACAGATCAAACGT 877
|||| ||||| ||||||||||| | || |||||||||||||||||| ||||||| ||
Sbjct 871 -CCGGAATTGGTAACCGGTTTGGTTACGAA-CTCACCGACAAGTGTGACGGATCAAATGT 928
Query 878 TTTGGAGATCAGCagaagaagagg 901
| |||||||||| ||||| ||||
Sbjct 929 TCTGGAGATCAGTGGAAGAGGAGG 952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56927418030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5