BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933823
Length=1010
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32550.1 | Symbols: | Cell differentiation, Rcd1-like prote... 1362 0.0
> AT2G32550.1 | Symbols: | Cell differentiation, Rcd1-like protein
| chr2:13819379-13822839 FORWARD LENGTH=1235
Length=1235
Score = 1362 bits (737), Expect = 0.0
Identities = 926/1017 (91%), Gaps = 14/1017 (1%)
Strand=Plus/Plus
Query 1 GAGATTTTCTCCGACCAATCCATGTCGGAAAATGTGGTCAATCTACCGGATTCTTTGTAT 60
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 7 GAGATTTTCTCCGACCAATCCATGTCGGAAAACATGGTGAATCTACCGGATTCTTTGTAC 66
Query 61 GAGGACTATAGTAAACTCAAGTTGACTTCGTCCCCGCCCTACGCTTCGTCA---TCCTCA 117
|||||||| |||||||||||||||||||| ||| || ||||||| ||| ||||||
Sbjct 67 GAGGACTACAGTAAACTCAAGTTGACTTC--ACCC-TCCAACGCTTCTTCATCCTCCTCA 123
Query 118 GCTCCTCCGCCGGGGCTCACCGTCGTAGCTCAGCCGACCGTAGAGATGATTCTCCAGTGG 177
||||||||||| |||||| |||||||||||| || || |||||||||||| ||||||||
Sbjct 124 GCTCCTCCGCCCAGGCTCAGCGTCGTAGCTCATCCAACGGTAGAGATGATTATCCAGTGG 183
Query 178 GTCTATGATCTTCATAAACCAAACTCACCCAAGTTTGATTTCGCGCTGCATAATCTCGCC 237
|||| |||| |||||||||| || ||| || || |||||| ||||||||||||||||||
Sbjct 184 GTCTGTGATATTCATAAACCGAAGTCATACATGTCTGATTTTGCGCTGCATAATCTCGCC 243
Query 238 TATCATAGGGACAATTTTGAGTTCTTGCCGAGTCTGTTATGGGAATCTAAAAATACTGTG 297
||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 TATCATAGGAACGACTTTGAGTTCTTGCCGAGTCTGTTATGGGAATCTAAAAATACTGTG 303
Query 298 TACATCATGTTGCAGGAGGTTTTTGAAGCCTACAGACACCTCGTAGGACACATCTCACTT 357
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 304 TACATCATGTTGCAGGAGGTTTTTGAAGCCTACAGACACCTCGCAGGACACATCTCACTT 363
Query 358 CGATTGTTCCCTCATCCATTGAATCCACTTCGAGTGTACAATGTTTTGCTTTTGTTCCAG 417
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 364 CGATTGTTCCCTCATCCGTTGAATCCACTTCGAGTGTACAATGTTTTTCTTTTGTTCCAG 423
Query 418 AGCATGGCTTATCACCCAGACACAAGCCGTCGGTTTCTTAGGGCTAAGATGCCAAACTAT 477
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 424 AGCATGGCTTGTCACCCAGACACAAGCCGTCAGTTTCTTAGGGCTAAGATGCCAAATTAT 483
Query 478 TTCTATCCTTTGATGGAC-CTTGGTCTCATCGATAAGCGTCACGAATGCCTGAGGCTTGC 536
||||||||| |||||||| || |||||||| ||||| || |||||||| ||||||||||
Sbjct 484 TTCTATCCTCTGATGGACACT-GGTCTCATTGATAAAAGTGACGAATGCATGAGGCTTGC 542
Query 537 TGCATTGGGTGTCATTGCTCATATGTTGAAGGCGTCTGAAGATGGAGCTGTTAGTCGTTA 596
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 543 TGCGTTGGGTGTCATTGCTCATATGTTGAAGGCGTCTGAAGATGGAGCTGTTAATCGTTA 602
Query 597 CCTAATGGAAAGTGGTGCTGTAGGTTTTTGCGCTAAACCCGTTGAGTTTGGCTCTATC-G 655
||||||||||||||||| ||| ||||| |||| ||||||| ||||||||||||||| | |
Sbjct 603 CCTAATGGAAAGTGGTGTTGTTGGTTTCTGCGTTAAACCCATTGAGTTTGGCTCTA-CAG 661
Query 656 AAACAAAAACTGTTGCTGTATACATACTTGACAAGATTATGTCAACTGATGAGGGGCTTC 715
||||||||| |||||| |||||||||| |||||||||||||| || ||| ||||||||
Sbjct 662 AAACAAAAAAAGTTGCTTTATACATACTCGACAAGATTATGTCGACGGATCAGGGGCTTT 721
Query 716 ATTACTGCTGCGTCTTGGCTGATCGGTTTTTCGTTATCGATGAACTCCTTAAGAAGCTGC 775
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||
Sbjct 722 ATTACTGCTGCGTCTTGGCTGATCGGTTTTACGTTATCGATGAGCTCCTTAAGAAGGTGC 781
Query 776 TCGTCTATCTTTCTTCCATG-TACAGACCTTCTTCCTGCTTGTTCAACCTTGTTATTGGT 834
|| ||||||||||| |||| | ||||||| |||| | |||||||| |||||||| ||||
Sbjct 782 TCTTCTATCTTTCTAACATGGT-CAGACCTCCTTCATCCTTGTTCAGCCTTGTTACTGGT 840
Query 835 TGCTACGTCAAGCTCTCCCAGAAATCCAGGGCTCGTGACGGAATAAGGCGATACACGCCT 894
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 841 TGCTACGTCAAGCTCTCCCAGAACTCCAGGGCTCGTAACGGAATAAGGCGATACACGCCT 900
Query 895 TTCTTGCTGTTTGACGGCACCTTTGCAAGATTATATGCTGAGGACCCTGTCGCTGATAAC 954
|||||||||||||||||||||||| | ||||||||||||||||| || || |||| ||||
Sbjct 901 TTCTTGCTGTTTGACGGCACCTTTTCCAGATTATATGCTGAGGATCCAGTGGCTGCTAAC 960
Query 955 AATCGGATTCAGCTGATTCAGAATCTGGAAAACTAAAGCAATGAAGTAC-CGGAGAC 1010
||||| ||||||||| ||||||||||||| ||||||||||||||||||| || ||||
Sbjct 961 AATCGAATTCAGCTGCTTCAGAATCTGGACAACTAAAGCAATGAAGTACTCG-AGAC 1016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49480634795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5