BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933830

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G32620.1 | Symbols: ATCSLB02, CSLB02, ATCSLB2 | cellulose sy...   291    2e-78


> AT2G32620.1 | Symbols: ATCSLB02, CSLB02, ATCSLB2 | cellulose 
synthase-like B | chr2:13840744-13844324 FORWARD LENGTH=2274
Length=2274

 Score =  291 bits (157),  Expect = 2e-78
 Identities = 183/195 (94%), Gaps = 3/195 (2%)
 Strand=Plus/Plus

Query  21   ATGGCAGATTCAAGCTATTCCCTCCCTCCTCTTTACG-AAATTTTGTCATACAAAAGCTA  79
            |||||||||||||||| ||| |||||||||||||| | |||  || ||||||||||| ||
Sbjct  1    ATGGCAGATTCAAGCTGTTCTCTCCCTCCTCTTTATGAAAACATT-TCATACAAAAGTTA  59

Query  80   TTTTCGAAGAGCTGTGGATCTCACGATTCTCGGCCTTCTCTTTTCTCTTCTCTTTGCACC  139
            | ||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct  60   TATTCTAAGAGCTGTGGATCTCACGATTCTTGGCCTTCTCTTTTCTCTTCTC-TTGCACC  118

Query  140  GAATCCTATATATGAGCCAAAACGGCATCATTTGGCTCGTGGCTTTCCTTTGTGAATCTT  199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  119  GAATCCTATATATGAGCCAAAACGGCATCATTTGGCTCGTGGCTTTCCTTTGTGAATCTT  178

Query  200  GTTTCTCATTCGTGT  214
            |||||||||||||||
Sbjct  179  GTTTCTCATTCGTGT  193



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9550872310


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5