BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933831
Length=517
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32620.1 | Symbols: ATCSLB02, CSLB02, ATCSLB2 | cellulose sy... 652 0.0
AT2G32540.1 | Symbols: ATCSLB04, CSLB04, ATCSLB4 | cellulose sy... 520 7e-147
AT2G32530.1 | Symbols: ATCSLB03, CSLB03, ATCSLB3 | cellulose sy... 520 7e-147
AT4G15290.1 | Symbols: ATCSLB05, CSLB05, ATCSLB5 | Cellulose sy... 514 3e-145
AT2G32610.1 | Symbols: ATCSLB01, CSLB01, ATCSLB1 | cellulose sy... 486 7e-137
AT4G15320.1 | Symbols: ATCSLB06, CSLB06, ATCSLB6 | cellulose sy... 191 6e-48
> AT2G32620.1 | Symbols: ATCSLB02, CSLB02, ATCSLB2 | cellulose
synthase-like B | chr2:13840744-13844324 FORWARD LENGTH=2274
Length=2274
Score = 652 bits (353), Expect = 0.0
Identities = 394/414 (95%), Gaps = 2/414 (0%)
Strand=Plus/Plus
Query 18 AAGATGGAGTACGAGAAGTTATGCTGGAAAGTGGAAGATGCCACCGGAGATTCTCATTTG 77
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 580 AAGAGGGAGTACGAGAAGTTATGCCGGAAAGTGGAAGATGCCACCGGAGATTCTCATTTG 639
Query 78 TTGGGTACAGA-AGATGAATTGGAAGCTTTCTCAAACACAAAATCAAATGATCATTCAAC 136
||||| ||||| | |||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 640 TTGGGCACAGACA-ATGAATTGGAAGCTTTTTCAAACACAAAACCAAATGATCATTCAAC 698
Query 137 AATAATTAAGGTGGTATGGGAGAACAAAGGAGGTGCAGGAGACGAGAAAGAGGTCCCTCA 196
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 699 TATAATCAAGGTGGTATGGGAGAACAAAGGAGGTGTAGGAGACGAGAAAGAGGTCCCTCA 758
Query 197 TATCGTATACATTTCAAGAGAGAAAAGACCAAACTACCTTCATCATTACAAAGCTGGAGC 256
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 759 TATCGTATACATTTCAAGAGAAAAAAGACCAAACTACCTTCATCATTACAAAGCTGGAGC 818
Query 257 CATGAACTTTCTGGCAAGAGTATCAGGGTTGATGACAAATGCACCATACATGTTGAACGT 316
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 819 CATGAACTTTCTGGCAAGAGTGTCAGGGTTGATGACAAATGCACCATACATGTTGAACGT 878
Query 317 AGACTGCGACATGTATGCAAACGAAGCCGATGTGGTGCGACAAGCAATGTGTATATTTCT 376
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 879 GGACTGCGACATGTATGCAAACGAAGCAGATGTGGTGCGACAAGCAATGTGTATATTTCT 938
Query 377 GCAAGGATCACCGAATCCAAATCATTGTGCTTTTGTTCAATTCCCTCAAGAGTT 430
|||| ||||| |||| ||| ||||||||||||||||||||||||||||||||
Sbjct 939 GCAAAAATCACAAAATCAAAACCATTGTGCTTTTGTTCAATTCCCTCAAGAGTT 992
> AT2G32540.1 | Symbols: ATCSLB04, CSLB04, ATCSLB4 | cellulose
synthase-like B4 | chr2:13814686-13818289 FORWARD LENGTH=2268
Length=2268
Score = 520 bits (281), Expect = 7e-147
Identities = 373/417 (89%), Gaps = 7/417 (2%)
Strand=Plus/Plus
Query 18 AAGATGGAGTACGAGAAGTTATGCTGGAAAGTGGAAGATGCCACCGG-AGATTCTCATTT 76
|||| |||||||||||||||| || |||||| ||||||||||| || || ||| || |
Sbjct 580 AAGAGGGAGTACGAGAAGTTAAGCCAGAAAGTAGAAGATGCCACTGGAAG-TTCCCACTG 638
Query 77 GTTGGGTACAGAAGATGAATTGGAAGCTTTCTCAAACACAAAATCAAATGATCATTCAAC 136
||||| | |||||||||| || |||||||||| |||||||||||||||||||||||||||
Sbjct 639 GTTGGATGCAGAAGATGACTTTGAAGCTTTCTTAAACACAAAATCAAATGATCATTCAAC 698
Query 137 AATAATTAAGGTGGTATGGGAGAACAAAGGAGGTGCAGGAGACGAGAAAGAGGTCCCTCA 196
||| |||||||||||||||| ||||| ||||||| |||||||| ||||||||||||||
Sbjct 699 TATAGTTAAGGTGGTATGGGAAAACAAGGGAGGTGTGGGAGACGAAAAAGAGGTCCCTCA 758
Query 197 TATCGTATACATTTCAAGAGAGAAAAGACCAAACT-ACCTTCATCATTACAAAGCTGGAG 255
| | || |||||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 759 TGTTGTTTACATTTCAAGAGAGAAAAGACCAAA-TCACTTTCATCATTACAAAGCTGGAG 817
Query 256 CCATGAACTTTCTGGCAAGAGTATCAGGGTTGATGACAAATGCACCATACATGTTGAACG 315
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 818 CCATGAACTTTCTGGTAAGAGTGTCAGGGTTGATGACAAATGCACCATACATGTTGAACG 877
Query 316 TAGACTGCGACATGTATG-CAAACGAAGCCGATGTGGTGCGACAAGCAATGTGTATATTT 374
|||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||
Sbjct 878 TAGACTGCGACATGTATGTCAAT-GAAGCAGATGTGGTGCGACAAGCAATGTGTATATTT 936
Query 375 CTGCAAGGATCACCGAATCCAAATCATTGTGCTTTTGTTCAATTCCCTCAAGAGTTT 431
|||||| |||| | || |||| ||||||||||||||||||| ||||||||| |||
Sbjct 937 CTGCAAAAATCAATGGATTCAAACCATTGTGCTTTTGTTCAATACCCTCAAGA-TTT 992
> AT2G32530.1 | Symbols: ATCSLB03, CSLB03, ATCSLB3 | cellulose
synthase-like B3 | chr2:13809216-13813570 FORWARD LENGTH=2418
Length=2418
Score = 520 bits (281), Expect = 7e-147
Identities = 370/414 (89%), Gaps = 2/414 (0%)
Strand=Plus/Plus
Query 18 AAGATGGAGTACGAGAAGTTATGCTGGAAAGTGGAAGATGCCACCGGAGATTCTCATTTG 77
|||| |||||||||||| ||| || ||| |||||||||||||| |||||||| |||| |
Sbjct 647 AAGAGGGAGTACGAGAAATTAAGCAGGAGGGTGGAAGATGCCACTGGAGATTCCCATTGG 706
Query 78 TTGGGTACAGAAGATGAATTGGAAGCTTTCTCAAACACAAAATCAAATGATCATTCAACA 137
|||| | |||||||||| || |||| |||||| || |||||| ||||||||||||||||
Sbjct 707 TTGGATGCAGAAGATGACTTTGAAGATTTCTCGAATACAAAACCAAATGATCATTCAACT 766
Query 138 ATAATTAAGGTGGTATGGGAGAACAAAGGAGGTG-CAGGAGACGAGAAAGAGGTCCCTCA 196
||| | |||||||||||||||||||| ||||||| | |||| |||||| ||||| |||||
Sbjct 767 ATAGTAAAGGTGGTATGGGAGAACAAGGGAGGTGTC-GGAGTCGAGAACGAGGTTCCTCA 825
Query 197 TATCGTATACATTTCAAGAGAGAAAAGACCAAACTACCTTCATCATTACAAAGCTGGAGC 256
| | ||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 826 TTTTGTATACATTTCAAGAGAGAAAAGACCAAATTATCTTCATCATTACAAAGCTGGAGC 885
Query 257 CATGAACTTTCTGGCAAGAGTATCAGGGTTGATGACAAATGCACCATACATGTTGAACGT 316
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 886 CATGAACTTTCTGGTAAGAGTGTCAGGGTTGATGACAAATGCACCATACATGTTGAACGT 945
Query 317 AGACTGCGACATGTATGCAAACGAAGCCGATGTGGTGCGACAAGCAATGTGTATATTTCT 376
|||||| ||||||||||| || ||||| ||||||||||| ||||||||||||||||||||
Sbjct 946 AGACTGTGACATGTATGCTAATGAAGCAGATGTGGTGCGCCAAGCAATGTGTATATTTCT 1005
Query 377 GCAAGGATCACCGAATCCAAATCATTGTGCTTTTGTTCAATTCCCTCAAGAGTT 430
||| |||| |||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1006 ACAAAAATCAATGAATTCAAACCATTGTGCTTTTGTTCAATTCCCTCAAGAGTT 1059
> AT4G15290.1 | Symbols: ATCSLB05, CSLB05, ATCSLB5 | Cellulose
synthase family protein | chr4:8721487-8726669 REVERSE LENGTH=2550
Length=2550
Score = 514 bits (278), Expect = 3e-145
Identities = 377/424 (89%), Gaps = 9/424 (2%)
Strand=Plus/Plus
Query 12 AATG-TAAAGATGGAGTACGAGAAGTTATGCTGGAAAGTGGAAGATGCCACCGGAGATTC 70
|||| | |||| |||||||| |||||||||| ||||||| ||||||||||| ||||||||
Sbjct 643 AATGATGAAGAGGGAGTACGTGAAGTTATGCCGGAAAGTTGAAGATGCCACAGGAGATTC 702
Query 71 TCATTTGTTGGGTACAGAAGATGAATTGGAAGCTTTCTCAAACACAAAATCAAATGATCA 130
|||| ||||| | |||| ||||| || ||||||||||||||||||||| ||||||||||
Sbjct 703 CCATTGGTTGGATGCAGACGATGATTTTGAAGCTTTCTCAAACACAAAACCAAATGATCA 762
Query 131 TTCAACAATAATTAAGGTGGTATGGGAGAACAAAGGAGGTGCAGGAGACGAGAAAGAGGT 190
|||||| || |||||||||||||||||||||| ||||||| ||||||||||||||| ||
Sbjct 763 TTCAACTATTGTTAAGGTGGTATGGGAGAACAAGGGAGGTGTAGGAGACGAGAAAGAAGT 822
Query 191 CCCTCATATCGTATACATTTCAAGAGAGAAAAGACCAAACTACCTTCATCATTACAAAGC 250
||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 823 CCCTCATCTTGTATACATTTCAAGAGAGAAAAGACCAAATTACCTTCATCATTACAAAAC 882
Query 251 TGGAGCCATGAACTTTCTGGCAAGAGTATCAGGGTTGATGACAAATGCACCATACATGTT 310
||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||
Sbjct 883 TGGAGCCATGAACTTTCTGTTAAGAGTCTCAGGGTTGATGACAAATGCACCATACACGTT 942
Query 311 GAACGTAGACTGCGACATGTATGCAAACGAAGCC-GATGTGGTGCGACAAGCAATGTGTA 369
|||||||||||| ||||||||||| || ||| || ||||||||||||||||||||||||
Sbjct 943 GAACGTAGACTGTGACATGTATGCTAATGAA-CCAGATGTGGTGCGACAAGCAATGTGTG 1001
Query 370 TATTTCTGCAAGGA-TC-ACCGAA-TCCAAATCATTGTGCTTTTGTTCAATTCCCTCAAG 426
||||| | ||| | || | ||| || ||| |||||||||||||||||||||||||||
Sbjct 1002 TATTTTTACAAA-ACTCGAA-GAACTC-AAACCATTGTGCTTTTGTTCAATTCCCTCAAA 1058
Query 427 AGTT 430
||||
Sbjct 1059 AGTT 1062
> AT2G32610.1 | Symbols: ATCSLB01, CSLB01, ATCSLB1 | cellulose
synthase-like B1 | chr2:13836234-13839513 FORWARD LENGTH=2274
Length=2274
Score = 486 bits (263), Expect = 7e-137
Identities = 364/413 (88%), Gaps = 6/413 (1%)
Strand=Plus/Plus
Query 18 AAGATGGAGTACGAGAAGTT-ATGCTGGAAAGTGGAAGATGCCACCGGAGATTCTCATTT 76
|||| ||||||||||||||| | || |||||||||||||||||||||||||||||||| |
Sbjct 583 AAGAGGGAGTACGAGAAGTTGAGGC-GGAAAGTGGAAGATGCCACCGGAGATTCTCATAT 641
Query 77 GTTGGGTACAGAAGATGAATTGGAAGCTTTCTCAAACACAAAATCAAATGATCATTCAAC 136
||||| | ||||||||| || ||||| ||||||||||||||| ||||||||||||||||
Sbjct 642 GTTGGATGTAGAAGATGATTTTGAAGCATTCTCAAACACAAAACCAAATGATCATTCAAC 701
Query 137 AATAATTAAGGTGGTATGGGAGAACAAAGGAGGTGCAGGAGACGAGAAAGAGGTCCCTCA 196
|| |||||||||||||||||||||| ||||||| |||||||||||||||| |||||||
Sbjct 702 TCTAGTTAAGGTGGTATGGGAGAACAAGGGAGGTGTAGGAGACGAGAAAGAGATCCCTCA 761
Query 197 TATCGTATACATTTCAAGAGAGAAAAGACCAAACTACCTTCATCATTACAAA-GCTGGAG 255
|||| ||||||| |||||||||||||||||||| || ||||| || | ||| | |||||
Sbjct 762 TATCATATACATATCAAGAGAGAAAAGACCAAATTATGTTCATAATCAAAAATG-TGGAG 820
Query 256 CCATGAACTTTCTGGCAAGAGTATCAGGGTTGATGACAAATGCACCATACATGTTGAACG 315
|||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 821 CCATGAACTTTCTGGCAAGAGTGTCAGGGTTGATGACAAACGCACCATACATCTTGAACG 880
Query 316 TAGACTGCGACATGTATGCAAACGAAGCCGATGTGGTGCGACAAGCAATGTGTATATTTC 375
| || |||||||||||||| || || || ||||| || |||||||||||||||||| |||
Sbjct 881 TGGATTGCGACATGTATGCCAATGATGCAGATGTAGTCCGACAAGCAATGTGTATACTTC 940
Query 376 TGCAAGGATCACCGAATCC-AAATCATTGTGCTTTTGTTCAATTCCCTCAAGA 427
|||||| |||| ||| ||| |||||||||||||||||||||| ||||||
Sbjct 941 TGCAAGAATCATTAAATATGAAA-CATTGTGCTTTTGTTCAATTCCGTCAAGA 992
> AT4G15320.1 | Symbols: ATCSLB06, CSLB06, ATCSLB6 | cellulose
synthase-like B6 | chr4:8742639-8747981 REVERSE LENGTH=2487
Length=2487
Score = 191 bits (103), Expect = 6e-48
Identities = 117/124 (94%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 147 GTGGTATGGGAGAACAAAGGAGGTGCAGGAGACGAGAAAGAGGTCCCTCATATCGTATAC 206
||||||||||||||||| ||||||| ||||||||||||||| ||||||||| | ||||||
Sbjct 838 GTGGTATGGGAGAACAAGGGAGGTGTAGGAGACGAGAAAGAAGTCCCTCATCTTGTATAC 897
Query 207 ATTTCAAGAGAGAAAAGACCAAACTACCTTCATCATTACAAAGCTGGAGCCATGAACTTT 266
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 898 ATTTCAAGAGAGAAAAGACCAAATTACCTTCATCATTACAAAACTGGAGCCATGAACTTT 957
Query 267 CTGG 270
||||
Sbjct 958 CTGG 961
Score = 180 bits (97), Expect = 1e-44
Identities = 138/157 (88%), Gaps = 6/157 (4%)
Strand=Plus/Plus
Query 272 AAGAGTATCAGGGTTGATGACAAATGCACCATACATGTTGAACGTAGACTGCGACATGTA 331
|||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1101 AAGAGTGTCAGGATTGATGACAAATGCACCATACATGTTGAACGTAGACTGTGACATGTA 1160
Query 332 TGCAAACGAAGCC-GATGTGGTGCGACAAGCAATGTGTATATTTCTGCAAGGA-TCACCG 389
||| || ||| || |||||||||||||||||||||||| ||||| | ||| | ||| |
Sbjct 1161 TGCCAATGAA-CCAGATGTGGTGCGACAAGCAATGTGTGTATTTTTACAAA-ACTCAAAG 1218
Query 390 AA-TCCAAATCATTGTGCTTTTGTTCAATTCCCTCAA 425
|| || ||| ||||||||||||||||| |||||||||
Sbjct 1219 AACTC-AAACCATTGTGCTTTTGTTCAGTTCCCTCAA 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24715200324
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5