BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933836
Length=1102
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32645.1 | Symbols: | Domain of unknown function (DUF313) ... 765 0.0
AT2G27410.1 | Symbols: | Domain of unknown function (DUF313) ... 586 1e-166
> AT2G32645.1 | Symbols: | Domain of unknown function (DUF313)
| chr2:13851667-13853343 REVERSE LENGTH=1376
Length=1376
Score = 765 bits (414), Expect = 0.0
Identities = 658/770 (85%), Gaps = 40/770 (5%)
Strand=Plus/Plus
Query 188 CGAGGCTAAGGAATACAAATCGGAAAAGGAGGAACCTAGGGTTTACTCAGGGCAAGTTAA 247
|||| ||||| || |||||||| ||||| |||||||||||||| ||||||||| |||||
Sbjct 171 CGAGACTAAGAAAGACAAATCGAAAAAGAAGGAACCTAGGGTTAACTCAGGGCGGGTTAA 230
Query 248 TATGGAGGAGGTGATGTACGAAGCTGTCGGAGAG-TG--GCTTGAGAGCCTCTTAGAACA 304
|||| ||||| |||||||||||| ||||| |||| || |||||| |||||||||||||
Sbjct 231 TATGCAGGAGTTGATGTACGAAGTTGTCGCAGAGTTGCCGCTTGACAGCCTCTTAGAACG 290
Query 305 TAGATCAATTACTTCCGTGAAACCAGTACTACAAAACCCTAATCCGGATTCAGAATCTTC 364
|||||||||||| | | || |||||| |||||||||||||||||||| | || ||
Sbjct 291 TAGATCAATTAC-T---T----CC-GTACTAGAAAACCCTAATCCGGATTCACAGTCGTC 341
Query 365 TATGTCATCTTGTGTCCGTCAGTCCAAGAAAAAACGTTGTTCCATTAACGTGGAAGAGAG 424
|||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||
Sbjct 342 TATGTCATCTTGTGTCAGTCAGTCCAAGAAAAAACGTTGTTCTGTTAAGGTGGAAGAGAG 401
Query 425 AAGTCGCAAGAAAAGCAAAACCGTTAGTCCTTTAGAGGTGGAACC-TATTCAAACGACTC 483
| ||| ||||||| ||||| ||||||||||||||||||| |||| |||||||||||||
Sbjct 402 ACGTCCCAAGAAAGGCAAAGTCGTTAGTCCTTTAGAGGTGCAACCAAATTCAAACGACTC 461
Query 484 C-CCCGGATTGGCTTTTGAACGTGATGAGGAGAGAAGAGAACGGCTACAATCCAAAGCTG 542
| ||| ||||||||||||||||| |||| | || | ||||| ||||||||||| ||||||
Sbjct 462 CACCC-GATTGGCTTTTGAACGTTATGA-G-GA-ACGAGAATGGCTACAATCCGAAGCTG 517
Query 543 ATCTCAACGAGGCAACTGTATAACACTGATCTCGCCGAACTTCAAGCACGCCTCTC-AGT 601
|||||||||||| || ||| ||| ||||||||| || | ||||||| ||| | |||
Sbjct 518 ATCTCAACGAGGGAATTGTTTAAGTCTGATCTCGATAAAGGTAAAGCACGTCTC-CAAGT 576
Query 602 CCCTTTTAGGCAAGTGAAAACTCCGGACTTTTTGACAGAGGATGAGACAAGAA-AATTAC 660
|||||||| |||||||||||||||||||||||||||||||| |||||||||| | |||
Sbjct 577 CCCTTTTAACCAAGTGAAAACTCCGGACTTTTTGACAGAGGACGAGACAAGAATCA-TAC 635
Query 661 ATAG-AAATGCGATGAAGCTTTGTCCCCACGGTGTGAGTGTGGATTTGGTGGATCCT--A 717
|| | |||||| |||||| || || | | |||||| |||| ||||||||||||||
Sbjct 636 AT-GAAAATGCCATGAAGATTCGTGACGATGGTGTGCCTGTGAATTTGGTGGATCCTCGG 694
Query 718 ATCGGAAGAAGCATGAGCTTGAATTGAGGAAGTGGAAGATG-AGTGGAAACTGGAATTAT 776
|| ||| ||||||| |||||| |||||||||||||||||| || |||||||||||||||
Sbjct 695 AT--GAATAAGCATGCGCTTGAGTTGAGGAAGTGGAAGATGAAG-GGAAACTGGAATTAT 751
Query 777 GTCTTTGTTAAAGGTTGGAAAAATGTGCTTGATGCTAATA-G-C---TT--T--AAGGAA 827
|||||||||||||||||||| |||||||||||||||| | | | || | ||||||
Sbjct 752 GTCTTTGTTAAAGGTTGGAACGATGTGCTTGATGCTAACAAGTCGAATTCGTTTAAGGAA 811
Query 828 AAAGACGTCTATCCTCTCTGGTCTTTCCGATCTGGAACAGGAAAACTCTGTTTTGCTCTC 887
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 812 AAAGACGTCTTTCCTCTCTGGTCTTTCCGATCTGGAACAGGCAAACTCTGTTTTGCTCTC 871
Query 888 ATCCCTAAAAATTCCAGCAAAGGCTCTACTTCGGGAGAATCTGGCCGTGG 937
| ||| |||||||||||||| ||||||||||| |||||||||||| ||||
Sbjct 872 ACCCC-AAAAATTCCAGCAACGGCTCTACTTCAGGAGAATCTGGCAGTGG 920
> AT2G27410.1 | Symbols: | Domain of unknown function (DUF313)
| chr2:11724427-11725419 REVERSE LENGTH=993
Length=993
Score = 586 bits (317), Expect = 1e-166
Identities = 520/615 (85%), Gaps = 26/615 (4%)
Strand=Plus/Plus
Query 301 AACATAGATCAATTACTTCCGTGAAACCAGTACT--ACAAAACCCTAATCCG-GATTCAG 357
|||| |||||||| ||||||||| |||||||||| ||||||||||||| || | || ||
Sbjct 21 AACAAAGATCAATCACTTCCGTGGAACCAGTACTACACAAAACCCTAAT-CGAGGTTTAG 79
Query 358 AATCTTCT-ATGTCATCTTGTG-T-C-CGTCAGTCC-AAGAAAAAACGTTGTTCCATTAA 412
|| | ||| | || |||| || | | |||| |||| ||| |||||| || |||||||
Sbjct 80 AACCGTCTCCT-TCTTCTTATGTTACTCGTCGGTCCAAAG-AAAAAC---GTCCCATTAA 134
Query 413 CGTGGAAGAGAGAAGTCGCAAGAAAAGCAAAACCGTTAGTCCTTTAGAGGTGGAACCTAT 472
|||||| ||||||||| ||||||| |||||| | || |||||||||||| |||||| ||
Sbjct 135 TGTGGAAAAGAGAAGTCACAAGAAACGCAAAATCATTTGTCCTTTAGAGGAGGAACCCAT 194
Query 473 TCAAACGACTCCCCCGGATTGGCTTTTGAACGTGATGAGGAGAGAAGAGAACGGCTACAA 532
|||||| ||||| ||||| ||||| |||||||| |||||||||||||||||||| |||||
Sbjct 195 TCAAACAACTCCACCGGAGTGGCTCTTGAACGTCATGAGGAGAGAAGAGAACGGTTACAA 254
Query 533 TCCAAAGCTGATCTCAACGAGGCAACTGTATAACACTGATCTC-GCCGAACTTCAAGCAC 591
||| ||| ||||||||||||||||||||||||| || |||||| ||| | ||||||
Sbjct 255 TCCGAAGTTGATCTCAACGAGGCAACTGTATAAGACCGATCTCAAAAAAAC-TGAAGCAC 313
Query 592 GCCTCTCAGTCCCTTTTAGGCAAGTGAAAACTCCGGACTTTTTGACAGAGGATGAGACAA 651
| |||||||| ||||||| ||| ||||||||||||||||||||||||||||| |||||||
Sbjct 314 GTCTCTCAGTTCCTTTTAAGCAGGTGAAAACTCCGGACTTTTTGACAGAGGACGAGACAA 373
Query 652 GAA-AATTACATAGA-AATGCGATGAAGCTTTGTCCCCACGGTGTGAGTGTGGATTTGGT 709
||| | ||||| || ||||| |||||| || || | | |||||| |||| |||| ||
Sbjct 374 GAATCA-TACAT-GAGAATGCCATGAAGATTCGTGACAATGGTGTGCCTGTGAATTTCGT 431
Query 710 GGATCCTAATCGGAAGAAGCATGAGCTTGAATTGAGGAAGTGGAAGATGAGTGGAAACTG 769
||||||| | | ||| ||||||| ||||||||||||||||||||| |||| ||||||||
Sbjct 432 GGATCCTGAGCTGAATAAGCATGTGCTTGAATTGAGGAAGTGGAAAATGAAAGGAAACTG 491
Query 770 GAATTATGTCTTTGTTAAAGGTTGGAAAAATGTGCTTGATGC---TAATA-G--CTTTAA 823
|| ||||||||||||||||||||||||||| ||||||||||| ||| | | |||||
Sbjct 492 GATTTATGTCTTTGTTAAAGGTTGGAAAAACGTGCTTGATGCTTGTAAGACGTTGTTTAA 551
Query 824 GGAAAAAGACGTCTATCCTCTCTGGTCTTTCCGATCTGGAACAGGAAAACTCTGTTTTGC 883
|||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 552 GGAAGACGACGTCTATCCTCTCTGGTCTTTCCGATCTGGAACAGGCAAACTCTGTTTTGC 611
Query 884 TCTCATCCCTAAAAA 898
||||| |||||||||
Sbjct 612 TCTCACCCCTAAAAA 626
Score = 211 bits (114), Expect = 1e-53
Identities = 155/173 (90%), Gaps = 9/173 (5%)
Strand=Plus/Plus
Query 927 TCTGGCCGTGGAAACTCTCTTCCTCGAGGCGATGGCGCTTCTACTTCCAGTAAATCTGGT 986
|||||||||||||||||||||||| | || |||||||||||||||||| || ||||||||
Sbjct 628 TCTGGCCGTGGAAACTCTCTTCCTGGCGGTGATGGCGCTTCTACTTCCGGTGAATCTGGT 687
Query 987 CAGGTACCATTAACCATTCCTCCTTCGCATCCGGAAAGAGATTCTAGCCACTCCGGCCAA 1046
||||||||||| | || | ||| | ||||| |||| |||||||| |||||||||||
Sbjct 688 CAGGTACCATT----A--CC-CATTC-C-TCCGGCAAGATATTCTAGCAACTCCGGCCAA 738
Query 1047 GGCTGTTCAGGAGAGAGCAGCTCTAGTTCTTCCTAATCATAACTCTGCTTATT 1099
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 GGCTGTTCAGGAGAGAGCAGCTCTAGTTCTTCCTAATCATAACTCTGCTTATT 791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54015786420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5