BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933846
Length=1561
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32750.1 | Symbols: | Exostosin family protein | chr2:13889... 2211 0.0
> AT2G32750.1 | Symbols: | Exostosin family protein | chr2:13889641-13891170
FORWARD LENGTH=1530
Length=1530
Score = 2211 bits (1197), Expect = 0.0
Identities = 1420/1528 (93%), Gaps = 13/1528 (1%)
Strand=Plus/Plus
Query 21 ATGATGAAACCAGTTCCAAAGCTTTGGGTTGTCATCTCAAGTGCGTTTTTGTTCTGTCTT 80
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1 ATGATGAAACCAGTTCCAAAGCTTTGGGTTGTCATCTCAAGTGCCTTTGTGTTCTGTCTT 60
Query 81 TTAGTTCTGTTTCAAATCAATAAATTAGATTTGATCGGAA-CAAATCTCCAAATCACTCA 139
||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||
Sbjct 61 TTAGTTCTGTTTCAAATCAATAAATCAGATTTGATC-GAAGCAAATCTCCAAATCACTCA 119
Query 140 TCACGTAAACAACTTCTTCATCTCCATCGTTGGTTCCTCACATAATCAAACCCTAAATCT 199
||| || ||||||||| |||||||| |||||| ||| ||| ||||||||| ||||||||
Sbjct 120 TCAAGTTAACAACTTCCTCATCTCCTTCGTTGCTTCTTCAAATAATCAAATCCTAAATCA 179
Query 200 CACCAGAA-ATGCGAATGAGAGTGATGGAATCAGAGCGAAACATCCTGAGAAAGAAGAAA 258
||||| || |||||||||||||||||||||||||||||||||| | |||| |||||||||
Sbjct 180 CACCA-AACATGCGAATGAGAGTGATGGAATCAGAGCGAAACAGCTTGAGGAAGAAGAAA 238
Query 259 CAGATACTTGCGCTGGAAGGTACGTCTATATGTACAATCTTCCAAGCATATTCAACGACG 318
| ||||||||||| ||||| ||| |||| ||||||||||||||||||| |||||||||||
Sbjct 239 CGGATACTTGCGCCGGAAGATACATCTACATGTACAATCTTCCAAGCACATTCAACGACG 298
Query 319 ACATAATCAAAGACTGTCGCCCACTCATCAAATGGTTCGATATGTGTCCATTCATGGTCA 378
|||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ACATCATCAAAGAATGTCGTCCACTCATCAAATGGTTCGATATGTGTCCATTCATGGTCA 358
Query 379 ATTCCGGGCTCGGTCCACAGGTTTCGGAGTCCGATAACACCACAGCTCGAGTCTTAACCG 438
|||||||||||||||||||| ||| || |||||||| ||||||||||||||||||||||
Sbjct 359 ATTCCGGGCTCGGTCCACAGATTTTGGTCTCCGATAAAACCACAGCTCGAGTCTTAACCG 418
Query 439 CGAAAACCGGTTCTTGGTACTCAACGAACCAATTCTTGCTGGCGGTTATCTTCCGAGAGA 498
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 419 TGAAAACCGGTTCTTGGTACTCAACGAACCAATTCTTGCTTTCGGTTATCTTCCGAGAGA 478
Query 499 GAATGAAACATTACGAGTGCTTAACCAACGACTCTTCTCTAGCCTCAGCGACCTATGTCC 558
| |||||||| |||||||| || |||||| ||||||||||||||||||||| ||||||||
Sbjct 479 GGATGAAACACTACGAGTGTTTGACCAACAACTCTTCTCTAGCCTCAGCGATCTATGTCC 538
Query 559 CATACTACGCAGGGTTTGATGTGAGCCGTCACCTCTGGGGATACAACATGACTGTTAGAG 618
||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 539 CATACTACGCAGGATTTGATGTGAGCCGTCACCTCTGGGGATACAACGTGACGGTTAGAG 598
Query 619 ACGAATTGGGGATGAAA-CTGGCTCAATGGCTAAGTGAGAGACCTGAATGGAGGAAGATG 677
||||||||| ||| ||| ||||| |||||||| || ||||||||||||||| ||||||||
Sbjct 599 ACGAATTGGCGAT-AAAGCTGGCACAATGGCTGAGAGAGAGACCTGAATGGGGGAAGATG 657
Query 678 TACGGTCGAGATCACTTCTTTGTGACCGGACGGATCGCTTGGGACTTCAGGAGGGTTCGC 737
||||| ||||||||||||||||||||||||||||| | |||||| ||||||||| ||| |
Sbjct 658 TACGGCCGAGATCACTTCTTTGTGACCGGACGGATTGGTTGGGATTTCAGGAGGTTTCAC 717
Query 738 GATGAAGATTCAGATTGGGGAAGCAAACTGATGCGATTACCCGAATTCGCAAA-CATGAC 796
|||||||||||||||||||||||||||||||||| |||||| |||||| | || | ||||
Sbjct 718 GATGAAGATTCAGATTGGGGAAGCAAACTGATGCTATTACCTGAATTCTCGAATC-TGAC 776
Query 797 AATGTTAGCAATCGAAACGACTGCTTGGGCTAACGAATTTGCGGTTCCTTATCCGACTTA 856
|||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 777 AATGTTAGGTATCGAAACGACTGCTTGGGCTAACGAATTTGCGATTCCTTATCCTACTTA 836
Query 857 TTTCCATCCAAAGAGCTTAACCGAGATTTGGAGATGGCAGAGGAAAGTGAAGAGTGTGAA 916
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 837 TTTCCATCCAAAGAGCTTAACAGAGATTTGGAGATGGCAGAAGAAAGTGAAGAGTGTGAA 896
Query 917 GAGGAAGTATTTGTTTTCGTTTGTTGGAGGTCCAAGACTTAAATTAGATGGATCTATAAG 976
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||
Sbjct 897 GAGGAAGTATTTGTTTTCGTTTGTTGGAGGTCCAAGACCTAAATTGGATGGATCTATTAG 956
Query 977 GGGAGAGATTATACAGCAGTGCCTTGCATCTCACGGTAAATGCAAATTTCTTAACTGTTT 1036
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 957 GGGAGAGATTATAAAGCAGTGCCTTGCATCTCACGGTAAATGCAACTTTCTTAACTGCTT 1016
Query 1037 TGTTAATGACTGCGATAATCCGGTTAAGATAATGGAGGTGTTTGAAAAATCGGTTTTCTG 1096
|||||||||||||||||||||||||||||||||| ||||||||||||| || || |||||
Sbjct 1017 TGTTAATGACTGCGATAATCCGGTTAAGATAATGAAGGTGTTTGAAAATTCTGTCTTCTG 1076
Query 1097 TTTACAACCTTCGGGAGATTCGTATACTCGGAGATCGATATTCGATTCGATTTTGGCCGG 1156
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||
Sbjct 1077 TTTACAACCTTCGGGAGATTCGTACACTCGGAGATCGATATTCGATTCGATTCTGGCGGG 1136
Query 1157 TTGTATACCGGTTTTCTTCAGCCCGGGTTCGGGTTATAACCAATATATTTGGTATTTCCC 1216
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 1137 TTGTATACCGGTTTTCTTCAGCCCAGGTTCGGGTTACAACCAATATATTTGGTATTTTCC 1196
Query 1217 TAAGGATTATACCAAGTACTCGGTTTACATACCAGAGAAAGAAATGAGAAATGGAACGGT 1276
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1197 AAAGGATTATACCAAGTACTCGGTTTACATACCAGAGAATGAAATGAGAAATGGAACGGT 1256
Query 1277 TACTCTCAAGAAGATTTTGGGTATGATCGATAAGGAGAGGATTTTGAGGATGAGGAATGT 1336
|| ||||||||| |||||||||||||||| |||||||||||||||||||||||| || |
Sbjct 1257 TAGTCTCAAGAATATTTTGGGTATGATCGCTAAGGAGAGGATTTTGAGGATGAGAAAAGA 1316
Query 1337 GGTTGCGAAGATTATACCGAAAATCATATACACTAAACCGGGGTTGGTTGGACCGGAGAA 1396
||||| |||||||||||| ||||||||||| | |||||| ||||| | |||||||||||
Sbjct 1317 GGTTGTGAAGATTATACCAAAAATCATATATAATAAACCAGGGTT--T-GGACCGGAGAA 1373
Query 1397 GATTGAAGATGCGTTTGACATTGCAGTGGATAGGATTCTTGAGAGGGTAGCAATGGTTAA 1456
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1374 GATTGAAGATGCGTTTGACATTGCAGTGGATAGGATGCTTGAGAGGGTAGCAATGGTTAA 1433
Query 1457 GAGGATGATGGAAGAAGGGAAAGATATTCAGAGTGAGTATTATTCACAGACAAAGGATTT 1516
||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||
Sbjct 1434 GAGGATGATGGAAGAAGGGAAAGATGTTCAAAGTCAGTATTATTCACAGACAAAGGATTT 1493
Query 1517 GAAAAAACTTGAGATTATA--TGAAAAA 1542
||||||||||||||||||| |||||||
Sbjct 1494 GAAAAAACTTGAGATTATACATGAAAAA 1521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77057836575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5