BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933851
Length=259
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32785.1 | Symbols: | Encodes a Rapid ALkalinization Factor... 307 3e-83
> AT2G32785.1 | Symbols: | Encodes a Rapid ALkalinization Factor
(RALF) family protein | chr2:13903272-13903487 FORWARD LENGTH=216
Length=216
Score = 307 bits (166), Expect = 3e-83
Identities = 198/214 (93%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 21 ATGGCGATGTTGAAGAAAATATCGGTTTTATATCTCGCTCTACTAATTATTTTTGTTTTT 80
||||||||||||||| |||||||||||||| | |||||||||| |||||||||||| ||
Sbjct 1 ATGGCGATGTTGAAGGCAATATCGGTTTTATGTGTCGCTCTACTGATTATTTTTGTTGTT 60
Query 81 GAGGCGAATACAATCAAAATGGAGCAAGTTATATCATATGATTCTATGCGTGTGAATCAT 140
||||| |||||||||| | ||||||||||||||||||||| || |||||||||||||||
Sbjct 61 AAGGCGGATACAATCAACAGGGAGCAAGTTATATCATATGAGTCAATGCGTGTGAATCAT 120
Query 141 GCATGGGGATGTTCTCAAAAATATCCTCAGTTTTGTGAGAAAACTAGGGCAAATCCATAT 200
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 GCATGGGGATGTTCTCAAAAATATCCTCAGTTTTGCCAGAAAACTAGGGCAAATCCATAT 180
Query 201 ACGAAGCCAAACCCAAAAAACAGTGAAGCTTCAT 234
||||||||| |||||||||||||||||||||||
Sbjct 181 ACGAAGCCACCCCCAAAAAACAGTGAAGCTTCAT 214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11812921015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5