BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933856

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G32788.1 | Symbols:  | Encodes a Rapid ALkalinization Factor...   263    6e-70


> AT2G32788.1 | Symbols:  | Encodes a Rapid ALkalinization Factor 
(RALF) family protein | chr2:13904916-13905110 FORWARD LENGTH=195
Length=195

 Score =  263 bits (142),  Expect = 6e-70
 Identities = 178/195 (91%), Gaps = 3/195 (2%)
 Strand=Plus/Plus

Query  22   ATGGGTATGTCTACGAAATTAATGAAGGCTATTATAATATATGTGGCTCTTATAATGGTA  81
            |||||||| |||| ||||| ||  |||||||| ||||||||| |||||||||| ||||| 
Sbjct  1    ATGGGTATCTCTAAGAAATCAACAAAGGCTATAATAATATATATGGCTCTTATTATGGTG  60

Query  82   TTCTTCACATTTGCAACACTCAAGACCAATGCAGAAGATGTGATAAGCTACGAAGCTCTC  141
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct  61   TTCTTCACATTTGCAACACTCAAGACCAATGCGGAAGATGTGATAAGCTACGAAGTTCTC  120

Query  142  AAACAAGATCATGCATGGGGATGTAGTCCAAAGTATCCTAGATTAT---GTCTCAAACAA  198
              |||||||||||||||||||||||||||||||| |||||||||||   |||||||||||
Sbjct  121  TTACAAGATCATGCATGGGGATGTAGTCCAAAGTTTCCTAGATTATCATGTCTCAAACAA  180

Query  199  AAGGCCAATCCCTAG  213
            |||||||||||||||
Sbjct  181  AAGGCCAATCCCTAG  195



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10556227290


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5