BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933857
Length=2613
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32800.1 | Symbols: AP4.3A | protein kinase family protein |... 3956 0.0
> AT2G32800.1 | Symbols: AP4.3A | protein kinase family protein
| chr2:13916452-13919179 FORWARD LENGTH=2728
Length=2728
Score = 3956 bits (2142), Expect = 0.0
Identities = 2452/2601 (94%), Gaps = 23/2601 (1%)
Strand=Plus/Plus
Query 1 TTTCGATA--TTTACACATTCACATGGCGCCAATGGCTATGGATCGTCTCTGTTTCGTAC 58
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 4 TTTCGATATCTTTACACATTCACATGGCGCCAATGGCTATGGATCATCTCTGTTTCGTAC 63
Query 59 TTCCTACAGAATCCGGCGAGTTAAAACCGCCGTCGTTAAAGTCTCCGGCGATGGTCgaag 118
| || ||||||||||||||||| ||| | | | | |||| ||||||||| |
Sbjct 64 TACCGACAGAATCCGGCGAGTT-AAA--G-C--C-----A----CCGGTGATGGTCGAGG 108
Query 119 agactaaagaagaagaagaggagaagaagagTCGTGATTGTGGACGTCAAGTTGTGAATT 178
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 109 AGACCACAGAAGAAGAAGAGGAGAAGAAGAGTCGTGATTGTGGACGTCAAGTTGTGAGTT 168
Query 179 TGATCGGAGATTTATTCCGGCGATTACACGGCTCCAAAATT-GTGAAGAGCTTGTATCTT 237
| ||||||||||||||||||||||||||||||| | || || |||||||||||| ||||
Sbjct 169 TAATCGGAGATTTATTCCGGCGATTACACGGCT-CTAAGTTGGTGAAGAGCTTGAATCTC 227
Query 238 TGTAGTATCAACGAGTGTAAAGATTTGATTTCAATGGAGATTAATAAATCTTTCACTGAC 297
||||||||||||||| ||||||||| ||||||||||||||| |||||||| |||||||||
Sbjct 228 TGTAGTATCAACGAGAGTAAAGATTCGATTTCAATGGAGATCAATAAATCATTCACTGAC 287
Query 298 ATGGAAGGTGTTCAACTTTCAAGCAAAGTCGGTTGCGAGAATCCAAGAATCTTTGGATAC 357
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 288 ATGGAAGGTGTTCAGCTTTCCAGCAAAGTCGGTTGCGAGAATCCAAGAATCTTTGGATAC 347
Query 358 TCTGAGCTTTACATCGGAACTAACGGTTTCAGCGACGAACTGATCCTCGGAAGCGGTGGT 417
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 348 TCTGAGCTTTATATCGGAACTAATGGTTTCAGCGACGAACTGATCCTCGGAAGCGGCGGT 407
Query 418 TTCGGCCGTGTTTACAAGGCGGTGTTACCGAGCGACGGAACCACCGTGGCTGTTAAATGC 477
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 408 TTCGGCCGCGTTTACAAGGCGTTGTTACCGAGCGACGGAACCACCGTGGCTGTTAAATGC 467
Query 478 TTGGCGGAGAAGAAAGGAGAGCAGTTTGAGAAAACTTTCGCGGCGGAGCTTGTTGCCGTG 537
|||||||||||||||||||| || || ||||||||||||||||||||||||||||| |||
Sbjct 468 TTGGCGGAGAAGAAAGGAGAACAATTCGAGAAAACTTTCGCGGCGGAGCTTGTTGCGGTG 527
Query 538 GCTCAGCTCCGGCATCGGAATCTTGTGAAGCTAAGAGGCTGGTGTCTACACGAAGACGAG 597
||||||||||| ||||| |||||||||||| ||||||| |||||||||||||||||||||
Sbjct 528 GCTCAGCTCCGCCATCGAAATCTTGTGAAGTTAAGAGGTTGGTGTCTACACGAAGACGAG 587
Query 598 TTGCTTCTTGTTTACGATTACATGCCTAACCGGAGCTTAGATCGTGTGCTTTTCCGACGA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 TTGCTTCTTGTTTACGATTACATGCCTAACCGGAGCTTAGATCGTGTGCTTTTCCGACGA 647
Query 658 CCGGAAGCTAACTCAGATTTTAAACCGTTGGATTGGGATCGGAGGGGTAAAATCGTCAAA 717
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 CCGGAAGTTAACTCCGATTTTAAACCGTTGGATTGGGATCGGAGGGGTAAAATCGTCAAA 707
Query 718 GGACTCGCCGCCGCGTTGTTCTACCTTCACGAGCAGTTAGAGACTCAGATTATTCACAGA 777
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 708 GGACTCGCCGCCGCGTTGTTCTACCTCCACGAGCAGTTAGAGACTCAGATCATTCACAGA 767
Query 778 GATGTGAAGACGAGTAACGTTATGTTGGATTCTGAGTTTAACGCTAAACTCGGAGACTTT 837
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 768 GATGTGAAGACGAGTAACGTTATGTTGGATTCTGAGTTTAACGCTAAACTCGGAGATTTT 827
Query 838 GGATTGGCTCGGTGGTTAGAACACAAGATTGATGAAACAGAGCCTGATTCAAGTTACGAC 897
|| || ||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 828 GGTTTAGCTCGGTGGTTAGAACACAAGATTGATGAAACAGAGCATGATTCGAGTTACGAC 887
Query 898 TCTGTTTCTTCCTTCCGTAACCACCAGTTCCGAGTCGCGGATTCGACCCGGATCGGTGGT 957
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 888 TCTGTTTCTTCCTTCCGTAACCACCAGTTCCGAGTCGCGGATTCGACTCGGATCGGTGGG 947
Query 958 ACTATCGGGTACTTGCCGCCTGAGAGTTTTCGGaaaaaaaCCGTCGCCACCGCTAAAACA 1017
|||||||||||||| || || |||||||| |||||||||||||| |||||||||||||||
Sbjct 948 ACTATCGGGTACTTACCACCGGAGAGTTTCCGGAAAAAAACCGTTGCCACCGCTAAAACA 1007
Query 1018 GATGTTTTCAGCTTCGGTGTTGTGGTTTTAGAGATTGTCTCTGGTAGACGAGCCGTTGAT 1077
|||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1008 GATGTTTTCAGCTTTGGTGTTGTGGTTTTAGAGGTTGTCTCCGGTAGACGAGCCGTTGAT 1067
Query 1078 CTTTCGTTCTCTGAAGATAAAATCATTTTGCTTGATTGGGTTCGGAGGTTATCCGATAAC 1137
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1068 CTTTCGTTCTCGGAAGATAAAATCATTTTACTTGATTGGGTTCGGAGATTATCCGATAAC 1127
Query 1138 CGGAAATTACTCGACGCTGGAGATTCTCGGTTA-CTAAAAGGGTCTTACGATAACTCTGA 1196
||||||||||||||||| || |||||||||||| | |||||| ||||| ||| ||||||
Sbjct 1128 CGGAAATTACTCGACGCCGGGGATTCTCGGTTAGC-AAAAGGATCTTATGATCTCTCTGA 1186
Query 1197 TATGAAGAGAATGATTCATCTTGCTCTGCTCTGTTCGTTAAACAACCCAACGCATCGTCC 1256
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1187 TATGAAGAGAATGATTCATCTTGCTCTGCTCTGTTCTTTAAACAATCCAACGCATCGTCC 1246
Query 1257 CAACATGAAATGGGTGATCGGAGCACTTTCCGGGGAGTTTTCCGGTAACTTACCGGCGTT 1316
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1247 CAACATGAAATGGGTTATCGGAGCACTTTCCGGCGAGTTTTCCGGTAACTTACCGGCGTT 1306
Query 1317 ACCTTCGTTTAAGAGCCATCCTCTTTATATTCCTTTATCTTCTCTAAAATCAACTTCAAC 1376
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1307 ACCTTCGTTTAAGAGCCATCCTCTTTATATTCCTTTATCTTCTTTAAAATCAACCTCAAC 1366
Query 1377 TTCGGCGACGACGACGACCACAAGAACAACGACGACCACCACCACCTCAACAACTAGCTT 1436
||||||||| ||||| || ||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1367 TTCGGCGACTACGACTACTACAAGAACAACGATGACCACCACCACCTCCACAACTAGCTT 1426
Query 1437 CAACGCGTCTTCCGAGTCAACACCCTCGTCAAATTACGTTACTGCCCTTGAGGATTCCAT 1496
||| ||||| || |||||||| || || ||||||||||||||||||||||||||||| ||
Sbjct 1427 CAATGCGTCGTCGGAGTCAACGCCGTCATCAAATTACGTTACTGCCCTTGAGGATTCTAT 1486
Query 1497 TTACCAGACGGCGGAGACTGGAGAAAATCGGTACTTCAACTACAACAGCCGGAGAGTGAC 1556
||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||
Sbjct 1487 TTACCAGACGGCGGAGACTGGAGAAAATCCGTACTTTAATTACAACAGCCGGAGAGTGAT 1546
Query 1557 GTCGTCAAAGTCTTTCGTATTGGACACGCCAAGGGAGATTTCATACAACGACCTCGTTTT 1616
||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1547 GTCATCAAAGTCTTTCGTATTGGACACGCCAAGAGAGATTTCATACAACGACCTTGTTTT 1606
Query 1617 AGCCACTGATAATTTCTCCGATGCTCGTCGCGTTGCTGAGGTTGATTTCGGTACGGCTTA 1676
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1607 AGCCACTGATAATTTCTCTGATGCACGTCGCGTTGCTGAGGTTGATTTTGGTACGGCTTA 1666
Query 1677 TTATGGTTTACTCAACGGAGACCAACATATTGTGGTGAAACGTCTCGGTATGACTAAATG 1736
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 TTATGGTTTACTAAATGGAGACCAACATATTGTGGTGAAACGTCTCGGTATGACTAAATG 1726
Query 1737 TCCGGCGCTTGTTACACGGTTCTCCACGGAACTACTTAACCTAGGCCGGCTTCGACATCG 1796
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1727 TCCGGCGCTTGTTACCCGGTTCTCCACTGAACTACTTAACCTAGGCCGGCTTCGACACCG 1786
Query 1797 TAACCTAGTTATGCTCCGTGGATGGTGCACAGAACACGGAGAAATGCTTGTAGTATACGA 1856
||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct 1787 TAACCTAGTAATGCTCCGTGGTTGGTGCACCGAACACGGAGAAATGCTTGTAGTGTACGA 1846
Query 1857 TTATTCCGCGAATCGTAAGCTAAGTCATCTTCTTTTCCATAACCATATACCGGGGAACTC 1916
|||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 1847 TTATTCCGCGAATCGTAAGCTAAGTCATCTTCTTTTCCATAATCATATACCTGGAAACTC 1906
Query 1917 TGTTTTGCGATGGAAAAGTCGGTACAACGTGATAAAATCGCTTGCTTGCGCAGTACGATA 1976
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 1907 TGTTTTGCGATGGAAAAGTCGGTACAACGTGATCAAATCGCTTGCTTGCGCTGTACGTTA 1966
Query 1977 CCTCCACGAGGAATGGGACGAACAAGTCATTCACCGAAACATTACTTCTTCAACTATATT 2036
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1967 TCTCCACGAGGAATGGGACGAACAAGTCATTCACCGAAACATTACTTCTTCAACTATATT 2026
Query 2037 TCTTGATAGAGACATGAATCCGCGGCTCTGCGGATTCGCATTGGCAGAGTTTTTGTCTAG 2096
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2027 TCTTGATAGAGATATGAATCCGCGGCTTTGCGGATTCGCATTGGCAGAGTTTTTGTCTAG 2086
Query 2097 AAACGACAAAGCTCATCAAGCTACAAAAAAGAAAGGATCCGCTCAAGGGATTTTCGGTTA 2156
||||||||| |||||||||||| |||||||||||||||| |||||||||||||| |||||
Sbjct 2087 AAACGACAAGGCTCATCAAGCTGCAAAAAAGAAAGGATCTGCTCAAGGGATTTTTGGTTA 2146
Query 2157 TATGGCACCAGAATATATGGAATCAGGCGAGGCTACAACCATGGCTGATGTATACAGCTT 2216
||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2147 TATGGCACCAGAATACATGGAATCCGGCGAGGCTACAACCATGGCGGATGTATACAGCTT 2206
Query 2217 CGGCGTCGTGGTGCTCGAGATGGTTACGGGGCAGCCCGCAGTGGATTACAAGAGGAAAAA 2276
||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2207 TGGCGTGGTAGTGCTCGAGATGGTTACGGGGCAGCCAGCAGTGGATTACAAGAGGAAAAA 2266
Query 2277 AGAAGATGCTCTTTTGGTGTTGAGAATCCGCGAAGTAGTTGGTAACCGGaaaaaaa-TCT 2335
||||||||||||| |||||||| |||||||||||||||||||||||| |||||||| |||
Sbjct 2267 AGAAGATGCTCTTATGGTGTTGCGAATCCGCGAAGTAGTTGGTAACC-GAAAAAAACTCT 2325
Query 2336 TGGAGGAGATTGCAGATATTCATTTGGATGACGAGTACGAGAATCGAGAATTGGCAAGGC 2395
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 2326 TGGAGGAGATTGCAGATATTCATTTGGATGATGAATACGAGAATCGAGAATTGGCAAGGC 2385
Query 2396 TATTACGGTTAGGGTTGGTTTGCACGCGAACCGATCCGAAGTTAAGGCCTAGCATTAGCC 2455
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2386 TATTACGGTTAGGGTTAGTTTGCACGAGAACCGATCCGAAGTTAAGGCCTAGCATTAGCC 2445
Query 2456 AAGTTGTGAGTATATTGGATGGAAGCGAGAGGTTCTTTGAAGAGGAAGGAGGAAAGGAAG 2515
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2446 AAGTGGTGAGTATATTGGATGGAAGCGAGAGGTTCTTCGAAGAGGAAGGAGGAAAGGAAG 2505
Query 2516 GTGACGTTAGCCGCAAGCAAATGTATGATTCGTCTATGTTGATGATTAGACAAATGCAAG 2575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2506 GTGACGTTAGCCGCAAGCAAATGTATGATTCGTCTATGTTGATGATTAGACAAATGCAAG 2565
Query 2576 CGCTTGGGATTCATTGAGTAA 2596
|||||||||| ||||||||||
Sbjct 2566 CGCTTGGGATCCATTGAGTAA 2586
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129731714598
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5