BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933858
Length=308
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32835.1 | Symbols: RALFL16 | RALF-like 16 | chr2:13931166-1... 335 2e-91
> AT2G32835.1 | Symbols: RALFL16 | RALF-like 16 | chr2:13931166-13931453
REVERSE LENGTH=288
Length=288
Score = 335 bits (181), Expect = 2e-91
Identities = 215/231 (93%), Gaps = 3/231 (1%)
Strand=Plus/Plus
Query 21 ATGGTTGCATACAAGAAGAGTCCTATTGTTTTTCTATTTGCTACAATGATGATTATCTTA 80
|||||||||||| |||||||||||||||||||||||||||||||||||||| || | |
Sbjct 1 ATGGTTGCATACGAGAAGAGTCCTATTGTTTTTCTATTTGCTACAATGATGCTTGTAATG 60
Query 81 TTTATGTTTTGTGGAAGTGGAGAAACAAGAACATTAGGGTACGGAGCTATTAAAAGAGGC 140
||| |||||||||||||||||||| |||||||||||||||||||| |||||||| ||| |
Sbjct 61 TTTTTGTTTTGTGGAAGTGGAGAAGCAAGAACATTAGGGTACGGATCTATTAAAGGAGAC 120
Query 141 C-AAGTTCCGGCATGTGGCTCTAAAAACCCCAATTCATGTGTCAAACAACCAGTTAACCA 199
| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGAA-TTCCGGCATGTGGCTATAAAAACCCCAATTCATGTGTCAAACAACCAGTTAACCA 179
Query 200 TTACCATAGAGGTTGTGAAAAACTTACCAGGTGTGCTCGTGATGCTGACTC 250
|||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 180 TTACCATAGAGGTTGTGAAAAAATTACCAGGTGTGCTCGTGATGCTG-CTC 229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14276040716
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5