BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933860
Length=1051
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32820.1 | Symbols: | Transcription elongation factor (TFII... 1123 0.0
> AT2G32820.1 | Symbols: | Transcription elongation factor (TFIIS)
family protein | chr2:13925817-13926979 FORWARD LENGTH=1163
Length=1163
Score = 1123 bits (608), Expect = 0.0
Identities = 883/1011 (87%), Gaps = 37/1011 (4%)
Strand=Plus/Plus
Query 55 CAGATCTTCCTCGTTTGGTATCTGCTGCAATTAGAGCTTCTGATTCGCAGAATGTTTCTG 114
||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||
Sbjct 3 CAGATCTTCCTCGTTTGGTATCTACTGCAATTAGAGCTTCTAATTCGCAGAATGCTTCTG 62
Query 115 ATTTTGAACGTTGCTTTGATGTTCTTCGACACATGAAGAGTTTGAATCTCTCGGTCAAAG 174
|| |||||||||||||||||||||||||| || ||||| ||||||||||||| ||||||
Sbjct 63 ATGTTGAACGTTGCTTTGATGTTCTTCGATACTTGAAGGGTTTGAATCTCTCTGTCAAAA 122
Query 175 ATCTTTCCCATTCTAAAGTGATACTTCCTTTGGAGAGTCTAAGGGATCACGACAACCCTA 234
||||||||||||| |||||||||||||| ||||||||||| || |||||||| |||||||
Sbjct 123 ATCTTTCCCATTCCAAAGTGATACTTCCCTTGGAGAGTCTGAGAGATCACGAAAACCCTA 182
Query 235 AGATACGAATGGAAACTAACTTATTGTTCAAC-TCTTGGATGAAGACTCTTTATTCCAGT 293
||||||||| |||| || || | |||||| || || |||||||||||| |||| |||||
Sbjct 183 AGATACGAACGGAAGCTCACGTCTTGTTC-ACTTCATGGATGAAGACTTTTTACTCCAGC 241
Query 294 GGACGAAA--C-TCTTCTACTTGCAACAAAGCTATTCCCCTGAAACTGAAGAAAGTTGAT 350
|||| ||| | |||||||||||||||||| ||| |||||||||||||||| || |
Sbjct 242 GGACAAAACTCTTCTTCTACTTGCAACAAACCTAATCCCCTGAAACTGAAG-AA----A- 295
Query 351 GTTGTTAAAGTGTGTTCGGAGTTGAAGAAGAAGAAAGAAGATCAGCTATCTCATGGCTTT 410
|||||||||| |||||||||||||||||||||||| ||||| || ||||||||||| |||
Sbjct 296 GTTGTTAAAGCGTGTTCGGAGTTGAAGAAGAAGAACGAAGAGCAACTATCTCATGGTTTT 355
Query 411 GCGGTTAATAGTAA-GCT--GAAAGAGACTGGTTTTTGT-GGGATGAAGAAGAACGAAGA 466
|||| || | ||| ||| |||||||||| |||||| | ||||||||||||||||||||
Sbjct 356 GCGG-TACT--TAAGGCTAAGAAAGAGACT-GTTTTTTTGGGGATGAAGAAGAACGAAGA 411
Query 467 TGAGAGTTCTAGGATTCATGAAACCGGAGAGGTGAGACAAACTGGTGATTGCAAGTCTTT 526
|||||| |||||| ||||||||||| ||||| ||| ||||| |||||||| |||||||||
Sbjct 412 TGAGAGATCTAGGGTTCATGAAACCAGAGAGATGAAACAAATTGGTGATTCCAAGTCTTT 471
Query 527 TGGATTGATGAGGACTATCCAGAAGAAGAAGCAATCATCGG-CTCTACCAATGAAAGTTT 585
|| |||||||||||||||| |||||||||||| | ||||| ||| |||||| ||| ||
Sbjct 472 TGCATTGATGAGGACTATCGAGAAGAAGAAGC-A--ATCGGCCTC-ACCAATTCAAGGTT 527
Query 586 CTGGAAACCCTAGCTCCGGGGCTCGTGAAACGATAGTGATTAAGAAATTTTTGAAGAAAC 645
|| ||||||||| |||||||| |||||||| ||||||||||||| |||||| ||| |
Sbjct 528 CTAAAAACCCTAGATCCGGGGCGGGTGAAACGGGAGTGATTAAGAAAATTTTGAGGAAGC 587
Query 646 CTGAC-TTT--TGCAAGTCTCTTCCACCAACATCAAGGCCTCCTCTCAAGTTGAAGAAGC 702
||||| ||| ||||||||| || | ||||||||||||||||||| |||||||||
Sbjct 588 CTGACTTTTGCTGCAAGTCTGTT----C--CATCAAGGCCTCCTCTCAACATGAAGAAGC 641
Query 703 ATCAACCGGTGAAAGCATTTGAAAACTCTAAAAATTGTCCTTTTG-TCAAGACGAACTCA 761
|||||||||||||||||||||||||| |||||| |||| ||| || | |||| |||||||
Sbjct 642 ATCAACCGGTGAAAGCATTTGAAAACCCTAAAACTTGT-CTTGTGTTGAAGAAGAACTCA 700
Query 762 ACGGAGATGTTGGAGCTGTTCGATATGGCCAAGAAGTCAGCTGATGTTGCCAATGCAAAG 821
|||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 701 CCGGAGATGTTGGAGCTATTCGAGATGGCCAAGAAGTCAGCAGATGTTGCCAATGCCAAG 760
Query 822 GGAATTCTCGCGGCTAAAGAAGAGGCATCAATCTGCGTAGACACT-CTCTCTTTACTCAT 880
||| ||||||| |||||||||||||||||||| ||||| |||| | ||| ||||||||||
Sbjct 761 GGATTTCTCGCAGCTAAAGAAGAGGCATCAATATGCGTCGACA-TACTCGCTTTACTCAT 819
Query 881 GGAATTCCCCATCATCTCAACAGCTACTGAAACAAGGCAAATCATGGTGAAGCTTGAGCG 940
| |||| ||||||||||||| |||| ||||||||| | ||||||| |||||||||||
Sbjct 820 GAAATTTTCCATCATCTCAACGGCTATTGAAACAAGACGGATCATGGAAAAGCTTGAGCG 879
Query 941 TCTCACAAAGCACAAAGATAGAAAGATATGCAATTCCGCATTAGCACTTCTTCACCATTG 1000
|||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||
Sbjct 880 TCTCACAAAGCACAAAGATAGAAAGATATGCAATGCTGCATTAGCACTTCTCCACCATTG 939
Query 1001 GAGGCAGAACATTAGAGATCAAGAACACTGAGTAGTGTCATCAGATAATCT 1051
|||||||| ||||||| ||||| |||| ||||||||||||||||| |||||
Sbjct 940 GAGGCAGACCATTAGAAATCAACAACAATGAGTAGTGTCATCAGAGAATCT 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51540234822
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5