BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933864
Length=1885
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32860.2 | Symbols: BGLU33 | beta glucosidase 33 | chr2:1394... 2942 0.0
> AT2G32860.2 | Symbols: BGLU33 | beta glucosidase 33 | chr2:13940187-13943801
FORWARD LENGTH=2096
Length=2096
Score = 2942 bits (1593), Expect = 0.0
Identities = 1798/1895 (95%), Gaps = 21/1895 (1%)
Strand=Plus/Plus
Query 1 TTCACAAG-AAAAACACTCATATGGCTACAGCTACTCTCACTCTTTTCCTAGGGATCTTA 59
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 26 TTCACAAGAAAAAACACTCATATGGCTACAGCTACTCTCACTCTTTTCCTAGGGCTCTTA 85
Query 60 GCCTTGACAAGTACCATACTTAGTTTCAACGCCGATGCTAGGCCTCAACCAAGAGATGAG 119
||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 86 GCCTTAACTAGTACCATACTTAGCTTCAACGCCGATGCTAGGCCTCAACCAAGTGATGAG 145
Query 120 GATCTTGGTACCGTCATTGGACCTCATCAAACTAGCTTCGATGACGAGGTAGGCATCGTG 179
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 146 GATCTTGGTACCATCATTGGACCTCATCAAACTAGCTTCGATGACGAGATAGGCATCGTG 205
Query 180 ATTGGACCGCATGCGACCGTCGATGATGACGAAGATATGGACATGGACATGGGCACCAGC 239
|||||||| ||||||||||| | ||||||||||| || ||||||||||||||||||| |
Sbjct 206 ATTGGACCACATGCGACCGT--A-GATGACGAAGACATTGACATGGACATGGGCACCACC 262
Query 240 GTTGGACCGCACACCAACCTAAATGATGATGATTTGGGCACCATCATTGGACCCGAGTAT 299
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 263 GTTGGACCGCAGACCAACCTAAATGATGATGATTTGGGCACCATCATTGGACCCGAGTTT 322
Query 300 GAGATCCACAAGCAAGATTTCCCCGAAGATTTCATCTTTGGAACATCTGTTTCCGCTTAT 359
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||
Sbjct 323 GAGATCCACAAGCAAGATTTCCCCGCAGATTTCATATTTGGAACATCTGTTTCCGCATAT 382
Query 360 CAGGTTGAAGGTGCTAAAAAGGGTTCTGGAAGAGGCTTGACCTCATGGGACGAATTTACA 419
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 383 CAGGTTGAAGGTGCTAAAAAGGGTTCTGGGAGAGGCTTGACCTCATGGGACGAATTTACA 442
Query 420 CACATGTTTCCTGAGAAGGTTCAACAAAATGGCGATGGAGATGACGGAGTCGACTTCTAT 479
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 443 CACATGTTTCCTGAGAAGGTTCAACAAAATGGCGATGGAGATGAGGGAGTCGACTTCTAT 502
Query 480 AACCGTTACAAGGGA-GATATAAAATTAATGAAGCAGTTGAACACGAATGGCTTCAGATT 538
| ||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 503 ACCCGTTACAA-GGATGATATAAAATTAATGAAGGAGTTGAACACGAATGGCTTCAGATT 561
Query 539 TTCAATCTCATGGACCAGGATCTTGCCTTATGGAACTATTGAAAAAGGTGTTAACGAGGA 598
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 562 TTCAATCTCATGGACCAGGATCTTGCCTTATGGAACTATTAAAAAAGGTGTAAACGAGGA 621
Query 599 GGGGGTGAAGTTCTACAACGATCTTATAGATGAACTTTTAGCCAATGGAATACAACCTTC 658
|||||||||||||||||||||||||||| ||||||||||||| |||||||| || |||||
Sbjct 622 GGGGGTGAAGTTCTACAACGATCTTATAAATGAACTTTTAGCTAATGGAATTCAGCCTTC 681
Query 659 GGTTACTCTCTTTCACTGGGAATCTCCGCTTGCTCTAGAAATGGAGTACAAAGGTTTCCT 718
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 682 GGTTACTCTCTTTCACTGGGAATCTCCACTTGCTCTAGAAATGGAGTACGGAGGTTTCCT 741
Query 719 AAGCGATAGGATAGTAGAGGATTTCCG-GCAGTTTGCAAACTTTTGCTTCAAGGAATTTG 777
|| ||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 742 AAACGAAAGGATAGTAGAGGATTTCCGTG-AGTTTGCAAACTTTTGCTTCAAGGAATTTG 800
Query 778 GAGATAGGGTGAAGAATTGGGCGACGTTTAACGAGCCATCGGTATACAGCGTTGCTGGTT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 GAGATAGGGTGAAGAATTGGGCGACGTTTAACGAGCCATCGGTATACAGCGTTGCTGGTT 860
Query 838 ACTCGAAAGGTAAGAAAGCGCCAGGACGGTGTTCTAAATGGCTAGCCCCAAAATGTCCCA 897
||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||
Sbjct 861 ACTCGAAAGGTAAGAAAGCACCAGGACGGTGCTCTAAATGGCAAGCCCCAAAATGTCCCA 920
Query 898 CAGGAGATTCATACGAGGAACCATACATAGTTGCCCACAACCAAATTCTTGCTCATCTTG 957
|||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 921 CAGGAGATTCATCCGAGGAGCCATACATAGTTGCTCACAACCAAATTCTTGCTCATCTTG 980
Query 958 CTGCTGTTGATGAATTCCGAAACTGTAAAAAGTGCCAAGAGGGTGGAGGGAAAATTGGAA 1017
|||||||||||||||||||||||||||||||| | | |||||||||||||||||||| |
Sbjct 981 CTGCTGTTGATGAATTCCGAAACTGTAAAAAG-GTC--GAGGGTGGAGGGAAAATTGGGA 1037
Query 1018 TAGTGTTGGTATCTCACTGGTTCGAGCCTAAAGATCCAAATTCGAGTAAAGATGTCGAGG 1077
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| | |
Sbjct 1038 TAGTGTTGGTATCTCACTGGTTCGAGCCTAAAGATCCAAATTCGAGTGAAGACGTCAAAG 1097
Query 1078 CAGCTAGACGGTCCCTCGAGTACCAACTCGGCTGGTTTCTTCGCCCTCTCACATATGGAC 1137
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 CAGCTAGACGATCCCTCGAGTACCAACTCGGCTGGTTTCTTCGCCCTCTCACATATGGAC 1157
Query 1138 ATTATCCAGTGGAAATGTTAGAAGATGTAAACATCCGACTGCCTGAATTTACACCAGAAG 1197
| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1158 AGTATCCAGCGGAAATGTTAGAAGATGTAAACATCCGACTGCGTGAATTTACACCAGAAG 1217
Query 1198 AATCTGAGAAACTAAGAAAATCTTTGGATTTCGTCGGATTAAACTACTATGGAGCATTCT 1257
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1218 AATCTGAGAAACTAAGAAAATCTTTGGATTTCGTCGGATTAAATTACTATGGAGCATTCT 1277
Query 1258 TCTCTACCCCTCTTGCCAGTGTCAATTCATCGCAGCTTAATTATGAGACCGACTTACGTG 1317
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 TCTCTACCCCTCTCGCCAAAGTCAATTCATCGCAGCTTAATTATGAGACCGACTTACGTG 1337
Query 1318 TAAACTGGACAG--ATCAGC-AA-AACC-AT-TCA-CCACATCT-CAAGTCAACTTCAAT 1369
|||||||||||| || | | || |||| | || || || | || | ||||||||||
Sbjct 1338 TAAACTGGACAGTTATTA-CTAATAACCTAAGTCTTCCTGATTTGCA-GACAACTTCAAT 1395
Query 1370 GGGTATAGTGATATATCCAGCGGGTTTGATGAAGATCTTGAAACATATCAAAGACGAATA 1429
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1396 GGGTATAGTGATATATCCAGCGGGTTTGAAGAATATCTTGAAACATATCAAAGACGAATA 1455
Query 1430 CATGGACCCAGAGATTTACATTATGGAGAATGGGATGGACGAGATCGACTATGGGACCAA 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 CATGGACCCAGAGATTTACATTATGGAGAATGGGATGGACGAGATCGACTATGGGACCAA 1515
Query 1490 AAGCGTAACGGAAGCCACTAACGATTACGGGAGGAAAGAGTTCATCAAGAGTCACATCTT 1549
|| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1516 AAACATAACGGAAGCTACTAACGATTACGGGAGGAAAGAGTTCATCAAGAGTCACATCTT 1575
Query 1550 AATCATGGGTAAATCCATCAGGATGGACAAAGTGAGGCTGAAGGGTTACTACATATGGTC 1609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1576 AATCATGGGTAAATCCATCAGGATGGACAAAGTGAGGCTGAAGGGTTACTACATATGGTC 1635
Query 1610 GTTATTGGACAACTTCGAGTGGGATAAAGGTTACAAAATCAGGTTCGGGCTTTATTACGT 1669
|||| |||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||
Sbjct 1636 GTTAATGGACAACTTCGAGTGGGATAAAGGTTATAAAGTCAGGTTCGGGCTCTATTACGT 1695
Query 1670 CGATTATAATAACAACATGACACGATATATAAGGTCATCTGGGAAATGGCTAAGTGAGTT 1729
|||||||||| ||||||||| ||| ||||||||||||||||| |||||||||||||||||
Sbjct 1696 CGATTATAATGACAACATGAAACGTTATATAAGGTCATCTGGAAAATGGCTAAGTGAGTT 1755
Query 1730 TCTTGATTCCAAAGAGACTCTCCATAAATGCTATTTTGAGGGCCATCGTGAGAAAGGATA 1789
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1756 TCTTGATTCCAAAGAGACTCTCCATAAATGCTATTTCGAGGGCCATCGTGAGAAAGGATA 1815
Query 1790 TGCTCCTAAGTTGTTCGACGTTGAGTATCTGGAACCTGAGAACTCGCAGCTAAGTTACAG 1849
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1816 TGCACCCAAGTTGTTCGACGTTGAGTATCTGGAACCTGAGAACTCGCAGCTAAGTTACAG 1875
Query 1850 GAGCGATTTTATGTGAAGAAGTGGTGAAACTATGA 1884
|||||||||||||||||||| |||||||| |||||
Sbjct 1876 GAGCGATTTTATGTGAAGAAATGGTGAAAGTATGA 1910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93322813155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5