BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933866
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32880.1 | Symbols: | TRAF-like family protein | chr2:13948... 1147 0.0
AT2G32870.1 | Symbols: | TRAF-like family protein | chr2:13944... 1070 0.0
> AT2G32880.1 | Symbols: | TRAF-like family protein | chr2:13948750-13950556
REVERSE LENGTH=1211
Length=1211
Score = 1147 bits (621), Expect = 0.0
Identities = 878/996 (88%), Gaps = 41/996 (4%)
Strand=Plus/Plus
Query 4 GACGACCATCATCCTCAAAATGGGTCTAACGTCATTTGAAGA-GATCATAAAAGAGAAGC 62
|||||||||||| ||||||||||||||||||||||||||||| | |||||||||| |||
Sbjct 42 GACGACCATCATGCTCAAAATGGGTCTAACGTCATTTGAAGACG-CCATAAAAGAGCAGC 100
Query 63 TAAAGGACCGCAAAAACGCTCACTTCATGTTGGTTGATGGAATGTCTAAGCTATTGACTC 122
||||||| || ||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 101 TAAAGGAACGAAAAAACGCTCACTTCATGTTGGTTGATGGAATGTCGAAGCTACTGACTG 160
Query 123 AAAAAGTTAATAATTGTCAGTCATTGGATTTCCATGTTTCTGGTATCAAATGGAGGTTGC 182
|||||||||| |||| |||||||||||||||||| || |||||| |||||||||||||||
Sbjct 161 AAAAAGTTAACAATTTTCAGTCATTGGATTTCCAAGTATCTGGTCTCAAATGGAGGTTGC 220
Query 183 TTATACGCCCAGCTGTGGGATTCAAAGATTATCTATCTGTTGCTGTGTGGATCATAGATG 242
|||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||
Sbjct 221 TTATACAACCAGCTGTGGGAGTAAAAGATTATCTATCTGTTGCTGTATGGATCATAGATG 280
Query 243 AAAAGTGTACCGGATCTAATTGGGAAGTCAAATTCAACTTCAAAATCGGCGTAGTCCCTC 302
||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 281 AAAAGTGTACCGGGCCTAATTGGGAAGTCAAATTCAACTTCAAAATCGGCCTACTCCCTC 340
Query 303 AGACTGGACCTGAAT-TTTCGTATTTCTTGGTGGGGTGTCACAACCAACAAA-ACCCT-C 359
||||||||||||||| |||| || ||| |||||||||||||||| || ||| | ||| |
Sbjct 341 AGACTGGACCTGAATATTTC-TACGTCTCGGTGGGGTGTCACAACGAA-AAACAACCTGC 398
Query 360 TTCAAGGGTTAGACAACTTCATATTATACACGGTGTTGAAGGAGAGGTTTCTTGTGAACG 419
||||||| ||| ||| |||||| | ||||| ||| ||||||||||||||||||||||
Sbjct 399 -TCAAGGGGTAGTCAAATTCATAACACACACGCAGTTAAAGGAGAGGTTTCTTGTGAACG 457
Query 420 ACAAAGCGGTTTTCTATGCCGAGATAAGC-AAT--GTCCA-ACCAAACTTCCCCGTTACC 475
||||||||||||||||||||||||||||| || ||| | ||||||||||| ||||||
Sbjct 458 ACAAAGCGGTTTTCTATGCCGAGATAAGCGAAGAAGTC-ATACCAAACTTCCTCGTTACT 516
Query 476 GGTATCCCTCCAACCATAGGAACAGCAGAACGCTTTAAACTGATAGAGGTGGCTCGGAAC 535
|||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 517 GGTATCCCTCGAACCATGGGGACAGCAGAACGCTTTAAACTGATAGAGGTGGCTCGGAAC 576
Query 536 AACTCCAGATTCACCTGGAAGATCACGAAGTTTTCCTCCTTCACTGGTGTAGAGCATTCG 595
|| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 577 AATTCCAGATTCACCTGGAAGATCACGAAGTTTTCCTCCTTCAATGGTGAAGAGCATTCG 636
Query 596 TCTGACGAGTTCACGGTTGGACCACGGAGATGGAGGCTA-TCAATGTACCCAAAAGGTTT 654
||| |||||||||||||||||||||||||||||| ||| | ||||||||||| |||
Sbjct 637 TCTTACGAGTTCACGGTTGGACCACGGAGATGGAAACTAGT-AATGTACCCAAGAGGAAC 695
Query 655 TGGAGATGGGAAAGGAAATTCGTTGTCTTTGTATTTGATTGCTTCCGATTACGTCAC--- 711
||||||||||||||||| ||||||||||||||||||| ||| || ||||||||||
Sbjct 696 CGGAGATGGGAAAGGAAACTCGTTGTCTTTGTATTTGAATGCGTCTAATTACGTCACCAA 755
Query 712 TGATGGTCCAAAGGGG-GTAACATTGGCTGTCTATAAGTTGAGAGTGTTGGACCAACTCC 770
| |||||||||||||| | |||||| || |||||||| ||||||||||||||||||||||
Sbjct 756 TAATGGTCCAAAGGGGAG-AACATTCGCGGTCTATAAATTGAGAGTGTTGGACCAACTCC 814
Query 771 ATCGCAATCACTAT-GAAATTAACTGCGAAGATTGGTTTCTTCAT--T----TA-A-C-- 819
|||||||||| | | |||||| ||||| |||||||||||||| || | | | |
Sbjct 815 ATCGCAATCATT-TCGAAATTGACTGCCAAGATTGGTTTCTTTATGATCCGGTTCATCCA 873
Query 820 -GA-----C-C-TGGGGACGTAATAAGTTTTTGCCGCTGGAGGAACTCCACAAAGCTTCG 871
|| | | |||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 874 AGATTATGCTCATGGGGACGTACCAAGTTCTTGCCGCTGGAGGAACTCCACAAAGCTTCT 933
Query 872 AGGGGATTTCTAGTGAACGATCAGATATATATCGGTGTTGAGTTCTTAATTGTATCCACT 931
||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 934 AGGGGATTTCTGGTGAATGATCAGATATATATCGGTGTTGAATTCTTAATTGTATCCACT 993
Query 932 ACTGAGTATCTCTGATGCGCATA-ACGGATTCGATC 966
|||||||||||||||||||||| |||| || ||||
Sbjct 994 ACTGAGTATCTCTGATGCGCATTCACGGGTTTGATC 1029
> AT2G32870.1 | Symbols: | TRAF-like family protein | chr2:13944611-13946790
REVERSE LENGTH=1622
Length=1622
Score = 1070 bits (579), Expect = 0.0
Identities = 861/992 (87%), Gaps = 39/992 (4%)
Strand=Plus/Plus
Query 4 GACGACCATCATCCTCAAAATGGGTCTAAC-GTCATTTGAAGAGATCATAAAAGAGAAGC 62
||||||||| ||||||| ||||||||| || |||| ||||||| | ||||||||||||||
Sbjct 305 GACGACCATTATCCTCATAATGGGTCT-ACTGTCACTTGAAGACACCATAAAAGAGAAGC 363
Query 63 TAAAGGACCGCAAAAACGCTCACTTCATGTTGGTTGATGGAATGTCTAAGCTATTGACTC 122
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 364 TAAAGGACCGCAAAAACGCTCACTTCATGTTGGTTGACGGAATGTCTAAGCTACTGACGG 423
Query 123 AAAAAGTTAATAATTGTCAGTCATTGGATTTCCATGTTTCTGGTATCAAATGGAGGTTGC 182
|||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 424 AAAAAGTTAAGAATTGTCAGTCATTGGATTTCCAAGTTTCTGGTGTCAAATGGAGGTTGG 483
Query 183 TTATACGCCCAGCT-GTGGGATTCAAAGATTATCTATCTGTTGCTGTGTG-GATCATAGA 240
|||||||| | || | |||| ||||| |||||||| ||| | || | ||||| |||
Sbjct 484 TTATACGCTTATCTAG-GGGAAGAAAAGACCATCTATCTTTTGTTCTG-GAGATCACAGA 541
Query 241 TGAAAAGTGTACCGGATCTAATTGGGAAGTCAAATTCAACTTCAAAATCGGCGTAGTCCC 300
||||||||||||||| |||| |||||| |||||||||||||||||||||||| |||||||
Sbjct 542 TGAAAAGTGTACCGGGTCTACTTGGGACGTCAAATTCAACTTCAAAATCGGCATAGTCCC 601
Query 301 TCAGACTGGACCTGAATT-TT-CGTATTTCTTGGTGGGGTGTCACAACCAACAAAACCCT 358
|||||||||||| || || || | | || ||||||||| ||| ||| || |||| | |
Sbjct 602 TCAGACTGGACCAGA-TTATTGCTTCGTT-TTGGTGGGGCATCAAAACGAAAAAAAACGT 659
Query 359 CTTCAAGGGTTAGACAACTTCATATTATACACGG-TGTTGAAGGAGAGGTTTCTTGTGAA 417
||||||||||| ||||||||||| | |||||| | |||||||||||||||||||||||
Sbjct 660 AGTCAAGGGTTAGCCAACTTCATATCACACACGGAT-TTGAAGGAGAGGTTTCTTGTGAA 718
Query 418 CGACAAAGCGGTTTTCTATGCCGAGATAAGCAATGTCCAACCAAACTTCCCCGTTACCGG 477
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 719 CGACAAAGCGGGGTTCTATGCCGAGATAAGCGATGTCCAACCAAACTTCCCCGTTACCCG 778
Query 478 TATCCCTCCAACCATAGGAACAGCAGAACGCTTTAAACTGATAGAGGTGGCTCGGAACAA 537
|||||||| ||| || || ||||||||||||||||||||||||||| | ||| ||| ||
Sbjct 779 TATCCCTCGAACAATGGGGACAGCAGAACGCTTTAAACTGATAGAGTTTTCTCCGAAAAA 838
Query 538 CTCCAGATTCACCTGGAAGATCACGAAGTTTTCCTCCTTC-ACTGGTGTAGAGCATTCGT 596
||||||||||||||||||||||||| |||||||||||||| | ||||| ||||||||| |
Sbjct 839 CTCCAGATTCACCTGGAAGATCACGCAGTTTTCCTCCTTCGA-TGGTGAAGAGCATTCTT 897
Query 597 CTGACGAGTTCACGGTTGGACCACGGAGATGGAGGCTA-TCAATGTACCCAAAAGGTTTT 655
|| |||||||||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct 898 CTTACGAGTTCACGGTTGGACCACGGAGATGGAAACTAGT-AATGTACCCAAAAGGAAAC 956
Query 656 GGAGATGGGAAAGGAAATTCGTTGTCTTTGTATTTGATTGCTTCCGATTACGTCACTGAT 715
|||||||| ||||||||||||||||||||||||||| |||| |||||||||||||| ||
Sbjct 957 GGAGATGGAAAAGGAAATTCGTTGTCTTTGTATTTGTTTGCATCCGATTACGTCACCAAT 1016
Query 716 GGTCCAAAGGG-GGTAACATTGGCTGTCTATAAGTTGAGAGTGTTGGACCAACTCCATCG 774
||||| ||||| || ||||||||| ||||||| ||||||||||||||||||||| ||||
Sbjct 1017 GGTCCTAAGGGTGG-AACATTGGCCATCTATAAATTGAGAGTGTTGGACCAACTCAATCG 1075
Query 775 CAATCACTATGAAATTAACTGC-GAAGATTGGTTTC-TTC-A----T-TTAA-C----G- 820
|||||||| ||||| | | || || ||||||||| || | | |||| | |
Sbjct 1076 CAATCACTGTGAAACTGAGTGTAGAT-ATTGGTTTCCTTATAACCCTGTTAATCAAATGG 1134
Query 821 A--CCT---GGGGACGTAATAAGTTTTTGCCGCTGGAGGAACTCCACAAAGCTTCGAGGG 875
| ||| |||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1135 ATTCCTTATGGGGACGTCCCAAGTTTTTGCCGCTGGAGGAACTCCACAAATCTTCGAGGG 1194
Query 876 GATTTCTAGTGAACGATCAGATATATATCGGTGTTGAGTTCTTAATTGTATCCACTACTG 935
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1195 GATTTCTAGTGAACGATCAGATATATATCGGTGTTGAGATCTCAATTGTATCCACTACTG 1254
Query 936 AGTATCTCTGATGCGCAT-AACGGATTCGATC 966
|||||||||||||||||| || ||||||||||
Sbjct 1255 AGTATCTCTGATGCGCATTAATGGATTCGATC 1286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47270332327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5