BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg933866 Length=966 Score E Sequences producing significant alignments: (Bits) Value AT2G32880.1 | Symbols: | TRAF-like family protein | chr2:13948... 1147 0.0 AT2G32870.1 | Symbols: | TRAF-like family protein | chr2:13944... 1070 0.0 > AT2G32880.1 | Symbols: | TRAF-like family protein | chr2:13948750-13950556 REVERSE LENGTH=1211 Length=1211 Score = 1147 bits (621), Expect = 0.0 Identities = 878/996 (88%), Gaps = 41/996 (4%) Strand=Plus/Plus Query 4 GACGACCATCATCCTCAAAATGGGTCTAACGTCATTTGAAGA-GATCATAAAAGAGAAGC 62 |||||||||||| ||||||||||||||||||||||||||||| | |||||||||| ||| Sbjct 42 GACGACCATCATGCTCAAAATGGGTCTAACGTCATTTGAAGACG-CCATAAAAGAGCAGC 100 Query 63 TAAAGGACCGCAAAAACGCTCACTTCATGTTGGTTGATGGAATGTCTAAGCTATTGACTC 122 ||||||| || ||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 101 TAAAGGAACGAAAAAACGCTCACTTCATGTTGGTTGATGGAATGTCGAAGCTACTGACTG 160 Query 123 AAAAAGTTAATAATTGTCAGTCATTGGATTTCCATGTTTCTGGTATCAAATGGAGGTTGC 182 |||||||||| |||| |||||||||||||||||| || |||||| ||||||||||||||| Sbjct 161 AAAAAGTTAACAATTTTCAGTCATTGGATTTCCAAGTATCTGGTCTCAAATGGAGGTTGC 220 Query 183 TTATACGCCCAGCTGTGGGATTCAAAGATTATCTATCTGTTGCTGTGTGGATCATAGATG 242 |||||| |||||||||||| | ||||||||||||||||||||||| ||||||||||||| Sbjct 221 TTATACAACCAGCTGTGGGAGTAAAAGATTATCTATCTGTTGCTGTATGGATCATAGATG 280 Query 243 AAAAGTGTACCGGATCTAATTGGGAAGTCAAATTCAACTTCAAAATCGGCGTAGTCCCTC 302 ||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||| Sbjct 281 AAAAGTGTACCGGGCCTAATTGGGAAGTCAAATTCAACTTCAAAATCGGCCTACTCCCTC 340 Query 303 AGACTGGACCTGAAT-TTTCGTATTTCTTGGTGGGGTGTCACAACCAACAAA-ACCCT-C 359 ||||||||||||||| |||| || ||| |||||||||||||||| || ||| | ||| | Sbjct 341 AGACTGGACCTGAATATTTC-TACGTCTCGGTGGGGTGTCACAACGAA-AAACAACCTGC 398 Query 360 TTCAAGGGTTAGACAACTTCATATTATACACGGTGTTGAAGGAGAGGTTTCTTGTGAACG 419 ||||||| ||| ||| |||||| | ||||| ||| |||||||||||||||||||||| Sbjct 399 -TCAAGGGGTAGTCAAATTCATAACACACACGCAGTTAAAGGAGAGGTTTCTTGTGAACG 457 Query 420 ACAAAGCGGTTTTCTATGCCGAGATAAGC-AAT--GTCCA-ACCAAACTTCCCCGTTACC 475 ||||||||||||||||||||||||||||| || ||| | ||||||||||| |||||| Sbjct 458 ACAAAGCGGTTTTCTATGCCGAGATAAGCGAAGAAGTC-ATACCAAACTTCCTCGTTACT 516 Query 476 GGTATCCCTCCAACCATAGGAACAGCAGAACGCTTTAAACTGATAGAGGTGGCTCGGAAC 535 |||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 517 GGTATCCCTCGAACCATGGGGACAGCAGAACGCTTTAAACTGATAGAGGTGGCTCGGAAC 576 Query 536 AACTCCAGATTCACCTGGAAGATCACGAAGTTTTCCTCCTTCACTGGTGTAGAGCATTCG 595 || |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 577 AATTCCAGATTCACCTGGAAGATCACGAAGTTTTCCTCCTTCAATGGTGAAGAGCATTCG 636 Query 596 TCTGACGAGTTCACGGTTGGACCACGGAGATGGAGGCTA-TCAATGTACCCAAAAGGTTT 654 ||| |||||||||||||||||||||||||||||| ||| | ||||||||||| ||| Sbjct 637 TCTTACGAGTTCACGGTTGGACCACGGAGATGGAAACTAGT-AATGTACCCAAGAGGAAC 695 Query 655 TGGAGATGGGAAAGGAAATTCGTTGTCTTTGTATTTGATTGCTTCCGATTACGTCAC--- 711 ||||||||||||||||| ||||||||||||||||||| ||| || |||||||||| Sbjct 696 CGGAGATGGGAAAGGAAACTCGTTGTCTTTGTATTTGAATGCGTCTAATTACGTCACCAA 755 Query 712 TGATGGTCCAAAGGGG-GTAACATTGGCTGTCTATAAGTTGAGAGTGTTGGACCAACTCC 770 | |||||||||||||| | |||||| || |||||||| |||||||||||||||||||||| Sbjct 756 TAATGGTCCAAAGGGGAG-AACATTCGCGGTCTATAAATTGAGAGTGTTGGACCAACTCC 814 Query 771 ATCGCAATCACTAT-GAAATTAACTGCGAAGATTGGTTTCTTCAT--T----TA-A-C-- 819 |||||||||| | | |||||| ||||| |||||||||||||| || | | | | Sbjct 815 ATCGCAATCATT-TCGAAATTGACTGCCAAGATTGGTTTCTTTATGATCCGGTTCATCCA 873 Query 820 -GA-----C-C-TGGGGACGTAATAAGTTTTTGCCGCTGGAGGAACTCCACAAAGCTTCG 871 || | | |||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 874 AGATTATGCTCATGGGGACGTACCAAGTTCTTGCCGCTGGAGGAACTCCACAAAGCTTCT 933 Query 872 AGGGGATTTCTAGTGAACGATCAGATATATATCGGTGTTGAGTTCTTAATTGTATCCACT 931 ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 934 AGGGGATTTCTGGTGAATGATCAGATATATATCGGTGTTGAATTCTTAATTGTATCCACT 993 Query 932 ACTGAGTATCTCTGATGCGCATA-ACGGATTCGATC 966 |||||||||||||||||||||| |||| || |||| Sbjct 994 ACTGAGTATCTCTGATGCGCATTCACGGGTTTGATC 1029 > AT2G32870.1 | Symbols: | TRAF-like family protein | chr2:13944611-13946790 REVERSE LENGTH=1622 Length=1622 Score = 1070 bits (579), Expect = 0.0 Identities = 861/992 (87%), Gaps = 39/992 (4%) Strand=Plus/Plus Query 4 GACGACCATCATCCTCAAAATGGGTCTAAC-GTCATTTGAAGAGATCATAAAAGAGAAGC 62 ||||||||| ||||||| ||||||||| || |||| ||||||| | |||||||||||||| Sbjct 305 GACGACCATTATCCTCATAATGGGTCT-ACTGTCACTTGAAGACACCATAAAAGAGAAGC 363 Query 63 TAAAGGACCGCAAAAACGCTCACTTCATGTTGGTTGATGGAATGTCTAAGCTATTGACTC 122 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 364 TAAAGGACCGCAAAAACGCTCACTTCATGTTGGTTGACGGAATGTCTAAGCTACTGACGG 423 Query 123 AAAAAGTTAATAATTGTCAGTCATTGGATTTCCATGTTTCTGGTATCAAATGGAGGTTGC 182 |||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 424 AAAAAGTTAAGAATTGTCAGTCATTGGATTTCCAAGTTTCTGGTGTCAAATGGAGGTTGG 483 Query 183 TTATACGCCCAGCT-GTGGGATTCAAAGATTATCTATCTGTTGCTGTGTG-GATCATAGA 240 |||||||| | || | |||| ||||| |||||||| ||| | || | ||||| ||| Sbjct 484 TTATACGCTTATCTAG-GGGAAGAAAAGACCATCTATCTTTTGTTCTG-GAGATCACAGA 541 Query 241 TGAAAAGTGTACCGGATCTAATTGGGAAGTCAAATTCAACTTCAAAATCGGCGTAGTCCC 300 ||||||||||||||| |||| |||||| |||||||||||||||||||||||| ||||||| Sbjct 542 TGAAAAGTGTACCGGGTCTACTTGGGACGTCAAATTCAACTTCAAAATCGGCATAGTCCC 601 Query 301 TCAGACTGGACCTGAATT-TT-CGTATTTCTTGGTGGGGTGTCACAACCAACAAAACCCT 358 |||||||||||| || || || | | || ||||||||| ||| ||| || |||| | | Sbjct 602 TCAGACTGGACCAGA-TTATTGCTTCGTT-TTGGTGGGGCATCAAAACGAAAAAAAACGT 659 Query 359 CTTCAAGGGTTAGACAACTTCATATTATACACGG-TGTTGAAGGAGAGGTTTCTTGTGAA 417 ||||||||||| ||||||||||| | |||||| | ||||||||||||||||||||||| Sbjct 660 AGTCAAGGGTTAGCCAACTTCATATCACACACGGAT-TTGAAGGAGAGGTTTCTTGTGAA 718 Query 418 CGACAAAGCGGTTTTCTATGCCGAGATAAGCAATGTCCAACCAAACTTCCCCGTTACCGG 477 ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 719 CGACAAAGCGGGGTTCTATGCCGAGATAAGCGATGTCCAACCAAACTTCCCCGTTACCCG 778 Query 478 TATCCCTCCAACCATAGGAACAGCAGAACGCTTTAAACTGATAGAGGTGGCTCGGAACAA 537 |||||||| ||| || || ||||||||||||||||||||||||||| | ||| ||| || Sbjct 779 TATCCCTCGAACAATGGGGACAGCAGAACGCTTTAAACTGATAGAGTTTTCTCCGAAAAA 838 Query 538 CTCCAGATTCACCTGGAAGATCACGAAGTTTTCCTCCTTC-ACTGGTGTAGAGCATTCGT 596 ||||||||||||||||||||||||| |||||||||||||| | ||||| ||||||||| | Sbjct 839 CTCCAGATTCACCTGGAAGATCACGCAGTTTTCCTCCTTCGA-TGGTGAAGAGCATTCTT 897 Query 597 CTGACGAGTTCACGGTTGGACCACGGAGATGGAGGCTA-TCAATGTACCCAAAAGGTTTT 655 || |||||||||||||||||||||||||||||| ||| | ||||||||||||||| Sbjct 898 CTTACGAGTTCACGGTTGGACCACGGAGATGGAAACTAGT-AATGTACCCAAAAGGAAAC 956 Query 656 GGAGATGGGAAAGGAAATTCGTTGTCTTTGTATTTGATTGCTTCCGATTACGTCACTGAT 715 |||||||| ||||||||||||||||||||||||||| |||| |||||||||||||| || Sbjct 957 GGAGATGGAAAAGGAAATTCGTTGTCTTTGTATTTGTTTGCATCCGATTACGTCACCAAT 1016 Query 716 GGTCCAAAGGG-GGTAACATTGGCTGTCTATAAGTTGAGAGTGTTGGACCAACTCCATCG 774 ||||| ||||| || ||||||||| ||||||| ||||||||||||||||||||| |||| Sbjct 1017 GGTCCTAAGGGTGG-AACATTGGCCATCTATAAATTGAGAGTGTTGGACCAACTCAATCG 1075 Query 775 CAATCACTATGAAATTAACTGC-GAAGATTGGTTTC-TTC-A----T-TTAA-C----G- 820 |||||||| ||||| | | || || ||||||||| || | | |||| | | Sbjct 1076 CAATCACTGTGAAACTGAGTGTAGAT-ATTGGTTTCCTTATAACCCTGTTAATCAAATGG 1134 Query 821 A--CCT---GGGGACGTAATAAGTTTTTGCCGCTGGAGGAACTCCACAAAGCTTCGAGGG 875 | ||| |||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 1135 ATTCCTTATGGGGACGTCCCAAGTTTTTGCCGCTGGAGGAACTCCACAAATCTTCGAGGG 1194 Query 876 GATTTCTAGTGAACGATCAGATATATATCGGTGTTGAGTTCTTAATTGTATCCACTACTG 935 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 1195 GATTTCTAGTGAACGATCAGATATATATCGGTGTTGAGATCTCAATTGTATCCACTACTG 1254 Query 936 AGTATCTCTGATGCGCAT-AACGGATTCGATC 966 |||||||||||||||||| || |||||||||| Sbjct 1255 AGTATCTCTGATGCGCATTAATGGATTCGATC 1286 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47270332327 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5