BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933867
Length=262
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32885.1 | Symbols: | Rapid alkalinization factor (RALF) fa... 313 6e-85
> AT2G32885.1 | Symbols: | Rapid alkalinization factor (RALF)
family protein | chr2:13951686-13953478 FORWARD LENGTH=1793
Length=1793
Score = 313 bits (169), Expect = 6e-85
Identities = 215/238 (90%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 19 aaaaaTGGTTATATCCAAGAAAACAATTGTGCAGTCACTCGCTTTTATGATTATTATATC 78
|||||||| |||||||||||||||| |||| || ||| | ||| |||| |||||||||||
Sbjct 573 AAAAATGGGTATATCCAAGAAAACAGTTGTACAATCATTTGCTCTTATAATTATTATATC 632
Query 79 TATCGTCATGAGCACAACCGAAGCAAAAAGCATAGGCGTTCCTGCTATGCGAGAAGATTT 138
|||||||||||||||||| || ||||| || ||||||| ||| |||||||||||||||||
Sbjct 633 TATCGTCATGAGCACAACGGAGGCAAACAGTATAGGCGCTCCAGCTATGCGAGAAGATTT 692
Query 139 ACCCAAAGGTTGTGGTCCTGGGTCTCCACCAGGTTGCAAGATGCAACCGGCTAATCCGTA 198
|||||||||||||| |||||| ||| || | |||||||||||||||||||||||||||||
Sbjct 693 ACCCAAAGGTTGTGCTCCTGGATCTTCAGCTGGTTGCAAGATGCAACCGGCTAATCCGTA 752
Query 199 TAAACCAGGTTGTGAAGCTAGCCAAAGATGCCGTGGTGGTTGATACTACGAGATATAA 256
|||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 753 TAAACCAGGTTGCGAAGCTAGCCAAAGATGTCGTGGGGGTTGATACTATGAGATATAA 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11963724262
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5