BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933868

Length=278
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G32885.1 | Symbols:  | Rapid alkalinization factor (RALF) fa...   424    3e-118
  AT2G32890.1 | Symbols: RALFL17 | RALF-like 17 | chr2:13952716-1...   424    3e-118


> AT2G32885.1 | Symbols:  | Rapid alkalinization factor (RALF) 
family protein | chr2:13951686-13953478 FORWARD LENGTH=1793
Length=1793

 Score =  424 bits (229),  Expect = 3e-118
 Identities = 260/275 (95%), Gaps = 2/275 (1%)
 Strand=Plus/Minus

Query  4     AGAGAAAGTGTGTGATCCATGGCTGCAGCAAGAGAATTGATTATATGTTGCTTCTTAACA  63
             ||||||||||| ||||||||||||||| | |||||||| |||||||||||||||||||||
Sbjct  1624  AGAGAAAGTGTCTGATCCATGGCTGCATCTAGAGAATTTATTATATGTTGCTTCTTAACA  1565

Query  64    CTTCTCTTATGCAATTTCTTCATGAGAGTCGACTCTGCTGGTGCTGCTGACGTCAGCAGA  123
             |||||| ||||||||||||||||||||||||| |||| || ||||||||||||||| |||
Sbjct  1564  CTTCTCCTATGCAATTTCTTCATGAGAGTCGAGTCTGGTGCTGCTGCTGACGTCAGTAGA  1505

Query  124   GGAGGATGCGGCGGTGGCGATGGCAGCCTCGGGGACGATAATGAGCGGTGTGTGGAGGCG  183
             |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1504  GGAGGATGCGGCGGCGGCGATGGCAGCCTCGGGGACGATAATGAGCGGTGTGTGGAGGCG  1445

Query  184   GCGAAAGAAGACGACGATGATGACGTGGATGATGTTTACAAAGTGATCAACAAGATGAGG  243
             | ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1444  GTGAAAGAAGACGACGACGATGATGTGGATGATGTTTACAAAGTGATCAACAAGATGAGG  1385

Query  244   ATATATGCTTGATCATATGCATGCATGATGCATTC  278
             ||||||||||||||||  |||||||||||||||||
Sbjct  1384  ATATATGCTTGATCAT--GCATGCATGATGCATTC  1352


> AT2G32890.1 | Symbols: RALFL17 | RALF-like 17 | chr2:13952716-13954115 
REVERSE LENGTH=1400
Length=1400

 Score =  424 bits (229),  Expect = 3e-118
 Identities = 260/275 (95%), Gaps = 2/275 (1%)
 Strand=Plus/Plus

Query  4     AGAGAAAGTGTGTGATCCATGGCTGCAGCAAGAGAATTGATTATATGTTGCTTCTTAACA  63
             ||||||||||| ||||||||||||||| | |||||||| |||||||||||||||||||||
Sbjct  807   AGAGAAAGTGTCTGATCCATGGCTGCATCTAGAGAATTTATTATATGTTGCTTCTTAACA  866

Query  64    CTTCTCTTATGCAATTTCTTCATGAGAGTCGACTCTGCTGGTGCTGCTGACGTCAGCAGA  123
             |||||| ||||||||||||||||||||||||| |||| || ||||||||||||||| |||
Sbjct  867   CTTCTCCTATGCAATTTCTTCATGAGAGTCGAGTCTGGTGCTGCTGCTGACGTCAGTAGA  926

Query  124   GGAGGATGCGGCGGTGGCGATGGCAGCCTCGGGGACGATAATGAGCGGTGTGTGGAGGCG  183
             |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  927   GGAGGATGCGGCGGCGGCGATGGCAGCCTCGGGGACGATAATGAGCGGTGTGTGGAGGCG  986

Query  184   GCGAAAGAAGACGACGATGATGACGTGGATGATGTTTACAAAGTGATCAACAAGATGAGG  243
             | ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct  987   GTGAAAGAAGACGACGACGATGATGTGGATGATGTTTACAAAGTGATCAACAAGATGAGG  1046

Query  244   ATATATGCTTGATCATATGCATGCATGATGCATTC  278
             ||||||||||||||||  |||||||||||||||||
Sbjct  1047  ATATATGCTTGATCAT--GCATGCATGATGCATTC  1079



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12768008246


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5