BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933869
Length=2273
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32900.1 | Symbols: ATZW10 | centromere/kinetochore protein,... 3557 0.0
AT2G32890.1 | Symbols: RALFL17 | RALF-like 17 | chr2:13952716-1... 534 1e-150
> AT2G32900.1 | Symbols: ATZW10 | centromere/kinetochore protein,
putative (ZW10) | chr2:13953731-13957748 FORWARD LENGTH=2583
Length=2583
Score = 3557 bits (1926), Expect = 0.0
Identities = 2163/2279 (95%), Gaps = 9/2279 (0%)
Strand=Plus/Plus
Query 1 ACGACCACCGTCCCTCCGTCATGCCGGAGATCGACGCGTTGTTTGAATCGATCAATGTTC 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 57 ACGACCACCGTCCCTCCGTCATGCCGGAGATAGACGCGTTGTTTGAATCGATCAATGTTC 116
Query 61 GGGACCTTCTCGCCGGACACGATCTAAACGATCCCACAACTCCGTTATCGGCGCCGGATC 120
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 117 GGGACCTTCTCGCCGGACACGATCTAAACGATCCCACAACTCCGTTATCTGCACCGGATC 176
Query 121 TCCGTCTCCTCATAAACCGCTTAGAGTCTCATTCCCTGCGGATCAAGTCCAAAGTTCAGT 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 177 TCCGTCTCCTCATAAACCGCTTAGAGTCTCATTCTCTGCGGATCAAGTCCAAAGTTCAGT 236
Query 181 CATACCTCGTCGCTCATCACTCTGATTTCTCAGAGCTCTTCTCGCTTTGTCAAGACACCG 240
| || |||||||||||||||||||||||||| ||||| || || ||||||||||||||||
Sbjct 237 CTTATCTCGTCGCTCATCACTCTGATTTCTCGGAGCTATTTTCTCTTTGTCAAGACACCG 296
Query 241 TCTCGAGGACTCGTCTGATCTCCGATGACGTCTCCGATGTCCTACAATTGGTTTCTGACC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCTCGAGGACTCGTCTGATCTCCGATGACGTCTCCGATGTCCTACAATTGGTTTCTGACC 356
Query 301 GTCCGATTGATGTTGAAATTCGTAGTGTAGTGGATGAGATAACCGAAAAGACTAAGGAAG 360
|||||||||||||||| || || ||||| || ||||||||||| ||||||||||||||||
Sbjct 357 GTCCGATTGATGTTGAGATACGCAGTGTGGTAGATGAGATAACGGAAAAGACTAAGGAAG 416
Query 361 TGAAATTGAAGAGAGAATCGCTTGATTTAGTGAGTGCGATCGTTGGAATCTGCGAGGCAT 420
|||||||||| |||||||| ||||||||||||| ||||||||| ||||| || |||||||
Sbjct 417 TGAAATTGAAAAGAGAATCTCTTGATTTAGTGAATGCGATCGTGGGAATTTGTGAGGCAT 476
Query 421 TGCAGGAAACGAAGGAAGCTTTGAAAAACGGACGTTTCAAATTCGCCGCTGAGAGAATCA 480
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 477 TGCAGGAAACGAAGGAAGCTTTGAAAAATGGACGTTTCAGATTCGCCGCTGAGAGAATCA 536
Query 481 GAGAA-TTGAAAGTCGTATTGAGGATTGGTGAAGAGGAAGAAGGAGAACCTGTTGCCTAT 539
||||| || ||||| |||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct 537 GAGAACTT-AAAGTTGTATTGAGAATTGGTGAAGAGGAAGATGGAGAACCTGTGGCTTAC 595
Query 540 GCTTTGCTTAGGAAGGAATGGTCTAATTGCTTTGATGAGATTCAAGAGGTGCTTGCTAAA 599
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 596 GCTTTACTTAGGAAGGAATGGTCTAATTGCTTTGACGAGATTCAAGAGGTGCTTGC-AAA 654
Query 600 -TTCATGGAGAATGCAGTGCGTTTCGAGCTAGACTCTAGTAGACTTCGGATTAAGTATCA 658
||||||||||||||||||||||| ||||||||||| |||||| | ||||||||||||||
Sbjct 655 GTTCATGGAGAATGCAGTGCGTTTTGAGCTAGACTCGAGTAGAATCCGGATTAAGTATCA 714
Query 659 GCTAAGCGTTGGTGAGACTGCTGGAATCGCTCTTAGTACTGTTCTCGAGGCAATGGAGGT 718
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 715 GCTAAGCGTTGGTGAGACTGCTGGAATCGCTCTTAGTACTGTTCTAGAGGCAATGGAGGT 774
Query 719 GATTGGAATCTTAGACTATGGGCTTGCGAAAGCAGCTGACTCAATCTTCAAGCATGTCAT 778
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 775 GATTGGAATATTAGACTATGGGCTTGCGAAAGCAGCTGACTCAATCTTTAAGCATGTCAT 834
Query 779 CACTCCAGCTGTAACTCATGCATCTACCTTTACCGCTGTGGAAGATTTAAGTAAATCCTC 838
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 835 CACTCCAGCTGTAACTCATGCATCTACCTTTGCCGCTGTGGAAGATTTATGTAAATCCGC 894
Query 839 AGGGGAAGTCACCGAAGCTACATTAAGGCTAGAGCAATCCTCCGATCATAAGGTTGAAGA 898
|||||||||||||||||| ||| ||||||||||||||||||| ||||||||| |||||||
Sbjct 895 AGGGGAAGTCACCGAAGCGACACTAAGGCTAGAGCAATCCTCAGATCATAAGTTTGAAGA 954
Query 899 TGTGGATGGAGATGCAATATATTCAGGAATTCTTAAGGTTGTTAAGTTCATTTGCAGTTC 958
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 955 TGTGGATGGAGATGCAATGTATTCTGGAATTCTTAAGGTTGTTAAGTTCATTTGCAGTTC 1014
Query 959 GTTGTGCTTTGGAAACATTACATGGATCCATTCTTTTGGGAGATTGACATGGCCGAGGAT 1018
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1015 CTTGTGCTTTGGAAACGTTACATGGATCCATTCTTTTGGGAGGTTGACATGGCCGAGGAT 1074
Query 1019 ATCAGAGCTGATTATAGCTAAATTTCTTTCAAAGGTTGTCCCAGAAGATGCTTCAAAACT 1078
||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 ATCAGAGTTAATTATATCTAAATTTCTTTCAAAGGTTGTCCCAGAAGATGCTTCAAAACT 1134
Query 1079 TGCTGACTTTCAGAAAATTATCGAGCGGACCTCTCAATTCGAAGCAGCTCTAAAGGAATT 1138
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1135 TGCTGACTTTCAGAAAATTATCGAGCGGACCTCTCAATTCGAAGCCGCTCTAAAGGAACT 1194
Query 1139 GAATTTTGTTTCACCATCTGACGCAGAGAGTAGGCTCAGCAAATACGCTGAAGATGTGGA 1198
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1195 GAATTTTGTTTCATCATCTGACGCAGAGAGTAGGCTCAGCAAATATGCTGAAGATGTGGA 1254
Query 1199 GGTTCATTTTGCATCTAGAAAGAAGATAGAAATCCTAGCAAAAGCAAGAAATTTGCTGCT 1258
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1255 GGTTCATTTTGCATCTAGAAAGAAGATAGAAATCCTAGCAAAAGCAAGAAATTTGCTGTT 1314
Query 1259 GCAATGTAACTTTACGATTCCCCAGG-TG--GATGTGAATTCTTCCAAGCACATCGTTTG 1315
||| |||||||||||||||||||||| | | | ||| | ||||||||||||| ||
Sbjct 1315 GCAGTGTAACTTTACGATTCCCCAGGATATTGCTATGAGGAATGCCAAGCACATCGTCTG 1374
Query 1316 CTTACTTTTCTCGTCTGAAAGGTGTGTGGTATCTGAAGCTGCATCTCAACTTATGCATTT 1375
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1375 CTTACTTTTCTCCTCTGAAAGGTGTGTGGTATCTGAAGCTGCATCTCAACTTATGAATTT 1434
Query 1376 GGTGCATAAGACGCTCGAGGATGTCTGTGTTTCTTCTGCAAGGGTTGCTTCAGAGTTCTA 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 GGTGCATAAGACGCTCGAGGATGTCTGTGTTTCTTCTGCAAGGGTTGCTTCAGAGTTCTA 1494
Query 1436 CAACGCTGCTCGAGATTCTATCCTTCTATATGAAGCTGTTGTTCCTGTCATGCTAGAGAA 1495
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1495 CAACGCTGCTAGAGATTCTATCCTTCTATATGAAGCTGTTGTTCCTGTCAAGCTAGAGAA 1554
Query 1496 ACAACTCGATGGCATCAACCAAGCTGCTGTTCTTCTGCACAACGATTGTCTATATTTGTT 1555
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 ACAACTCGATGGCCTCAATGAAGCTGCTGTTCTTCTGCACAACGATTGTCTATATTTGTT 1614
Query 1556 CGAAGAGATACTTGGACTTGCTTTTGAGTATCGTGCTAGCTTCCCTAGCTCCATCAAGGA 1615
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 CGAAGAGATACTTGGCCTTGCTTTTGAGTATCGTGCTAGCTTCCCTAGCTCCATCAAGGA 1674
Query 1616 GTATGCAGTCTTTGCTGACATAGCCCCAAGATTTAAACTGATGGCAGAAGAAGTTTTGCA 1675
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1675 GTATGCAGTCTTTGCTGACATAGCCCCAAGATTTAAACTGATGGCCGAAGAAGTTTTGCA 1734
Query 1676 AAAACAAGTTCATCTAGTAATTTCGAGTCTACGAGAGGCTATAGATAGTGCAGATGGATT 1735
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1735 AAAACAAGTTCATCTAGTAATTTCAAGTCTGCGAGAGGCTATAGATAGTGCAGATGGATT 1794
Query 1736 TCAGAATACTCATCAAATGAAACAATTTGAATCTGCAAAATTTAGCATTGAGCAGGTTGT 1795
|||||||||||||||||| ||||| ||| |||||||| ||||||||||||| ||||||||
Sbjct 1795 TCAGAATACTCATCAAATTAAACAGTTTAAATCTGCAGAATTTAGCATTGATCAGGTTGT 1854
Query 1796 CTTTAGTCTAGAGAAAGTACATATGATATGGGAGCCGGTCTTACGGCCCAAAACTTACAA 1855
|||||||||| |||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1855 CTTTAGTCTAAAGAATGTGCATATGATATGGGAGCCAGTCTTACGGCCCAAAACTTACAA 1914
Query 1856 GCAAAGCATGTGCGCAGTTTTGGAGTCGGTATTTCGCAGAATAGCCAGAGATATTCTTCT 1915
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1915 GCAAAGCATGTGCGCAGTTTTGGAGTCTGTATTTCGCAGAATAGCTAGAGATATTCTTCT 1974
Query 1916 TCTAGACGACATGGCTGCTGATGAAACTATTC-AGCTACAAAGACTGATTTATCCCATGT 1974
||||||||||||||||||||| |||||| ||| ||||||||| ||||||||||| |||||
Sbjct 1975 TCTAGACGACATGGCTGCTGACGAAACT-TTCGAGCTACAAAAACTGATTTATCTCATGT 2033
Query 1975 TGGAGAATCTATCTTCTTTACTCGATTCCCTGAGATCTGCAGATGAGACTTCTCGTCCTC 2034
|| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2034 TGAAGAATCTATCTTCTGTACTCGATTCCGTGAGATCTGCAGATGAGACTTCTCGTCCTC 2093
Query 2035 TTGATGATCTCATACCATCTTTGCGCAAAGCCCGTAAACTAGCAGAATTATTGGATATGC 2094
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 2094 TTGATGATATCATACCATCTTTGCGCAAAACCCGTAAACTAGCAGAACTATTGGATATGC 2153
Query 2095 CTCTCAAGTCTATAACTTCAGCTTGGGAAAGTGGGGAGTTATTTAGTTGCAATTTCACAA 2154
|||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 2154 CTCTCATGTCTATAACTTCAGCTTGGGAAAGCGGGGAGTTATTTAGATGCAATTTCACAA 2213
Query 2155 GAACAGAGGTACAAGATTTCATCAAAGCTATATTTACAGATTCGCCGCTGAGAAAAGAAT 2214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2214 GAACAGAGGTACAAGATTTCATCAAAGCTATATTTACAGATTCGCCGCTGAGAAAAGAAT 2273
Query 2215 GCTTATGGAGGATAGACGAGTTTAGCCAGTAGATTGGAAATGGTAAAACTTGaaaaaaa 2273
|||||||||||||||||||| ||| ||||||||||||||||| |||||||| |||||||
Sbjct 2274 GCTTATGGAGGATAGACGAGGTTAACCAGTAGATTGGAAATGATAAAACTTAAAAAAAA 2332
> AT2G32890.1 | Symbols: RALFL17 | RALF-like 17 | chr2:13952716-13954115
REVERSE LENGTH=1400
Length=1400
Score = 534 bits (289), Expect = 1e-150
Identities = 315/328 (96%), Gaps = 0/328 (0%)
Strand=Plus/Minus
Query 1 ACGACCACCGTCCCTCCGTCATGCCGGAGATCGACGCGTTGTTTGAATCGATCAATGTTC 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 329 ACGACCACCGTCCCTCCGTCATGCCGGAGATAGACGCGTTGTTTGAATCGATCAATGTTC 270
Query 61 GGGACCTTCTCGCCGGACACGATCTAAACGATCCCACAACTCCGTTATCGGCGCCGGATC 120
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 269 GGGACCTTCTCGCCGGACACGATCTAAACGATCCCACAACTCCGTTATCTGCACCGGATC 210
Query 121 TCCGTCTCCTCATAAACCGCTTAGAGTCTCATTCCCTGCGGATCAAGTCCAAAGTTCAGT 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 209 TCCGTCTCCTCATAAACCGCTTAGAGTCTCATTCTCTGCGGATCAAGTCCAAAGTTCAGT 150
Query 181 CATACCTCGTCGCTCATCACTCTGATTTCTCAGAGCTCTTCTCGCTTTGTCAAGACACCG 240
| || |||||||||||||||||||||||||| ||||| || || ||||||||||||||||
Sbjct 149 CTTATCTCGTCGCTCATCACTCTGATTTCTCGGAGCTATTTTCTCTTTGTCAAGACACCG 90
Query 241 TCTCGAGGACTCGTCTGATCTCCGATGACGTCTCCGATGTCCTACAATTGGTTTCTGACC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 89 TCTCGAGGACTCGTCTGATCTCCGATGACGTCTCCGATGTCCTACAATTGGTTTCTGACC 30
Query 301 GTCCGATTGATGTTGAAATTCGTAGTGT 328
|||||||||||||||| || || |||||
Sbjct 29 GTCCGATTGATGTTGAGATACGCAGTGT 2
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112800624615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5