BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933883
Length=1831
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33010.1 | Symbols: | Ubiquitin-associated (UBA) protein | ... 510 2e-143
> AT2G33010.1 | Symbols: | Ubiquitin-associated (UBA) protein
| chr2:14010838-14013246 FORWARD LENGTH=2004
Length=2004
Score = 510 bits (276), Expect = 2e-143
Identities = 502/604 (83%), Gaps = 43/604 (7%)
Strand=Plus/Plus
Query 789 ATTCAGGGAAGTAGCACTTCTGCTGAAAACAAGGAAGACCACCCTCCGCCATATAATCTT 848
|||||||||||||||| ||||||| ||||| |||||||||||| |||||| | ||| ||
Sbjct 1009 ATTCAGGGAAGTAGCAGTTCTGCTCAAAACTTGGAAGACCACCCACCGCCAAACAATATT 1068
Query 849 GATAGAATCTGCAGTGAAACTGGAGTGTGTCGAAATGAAGCACTCTATTACCTCGAATCC 908
||||||||||||| ||||||||| |||| |||| ||||||| |||||||||| ||||||
Sbjct 1069 GATAGAATCTGCACTGAAACTGGTGTGTCTCGAGGTGAAGCAGTCTATTACCTTGAATCC 1128
Query 909 TTCGATTCTGATTTGGCTACGGCGATTGAGGCTTGCCGCAGTAAAACCTTGCCTCCCCTC 968
|||||| |||||||||| | ||||| |||||||||||||| |||| ||||||| |||||
Sbjct 1129 TTCGATGGTGATTTGGCTTCAGCGATAGAGGCTTGCCGCAGCAAAAACTTGCCTACCCTC 1188
Query 969 AAGGTTAGATCTTTGCCAGTGGTTTCGGTGAATGATATATCCGCGGTACCAGAGTGGGAG 1028
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1189 AAGGTTAGATCTTCGCCAGTGGTTTCGGTGAATGAGATATCCGCGGTACCAGAGTGGGAG 1248
Query 1029 TCACCAACAGCGAGGCCACTGGTAATGAACTCACGTCGGATTTCGAATGAGATGCGGATT 1088
|||||||||| |||||||||||| ||||| || ||| ||||||||||||| ||| ||||
Sbjct 1249 TCACCAACAGAGAGGCCACTGGTGATGAATTCTTGTCCGATTTCGAATGAGCTGCAGATT 1308
Query 1089 CAGCCAGAGCAACTTCCGCCAAAGATAGAGGAACAATCGTCTGGATCCAATGCTGTAAAA 1148
|||||||||||||| |||| ||| | ||||||| | || ||| || |
Sbjct 1309 CAGCCAGAGCAACTACCGCTAAACAAAGAGGAA-A-TC------ATC-AA------A--- 1350
Query 1149 ATCAAGGACTTCTGTGATATTGTTGGAACACATCCAGATGTCGCAGTCGCTTACCTCGAC 1208
||| |||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1351 --CAA----TTCTGTGAGATTGTTGGATTGCATCCAGATGTCGCAGTCGCTTACCTCGAG 1404
Query 1209 CGCTGCAAATGGCA-TGTACAAGAGGCCATCAACTATTTCATGGACGAGGGTATACGTCC 1267
|| ||| ||||| | | |||||| |||||| ||||||||||| | |||| ||| |
Sbjct 1405 CGTTGCCAATGG-AGTTTACAAGTTGCCATCGACTATTTCATGAATGAGGC-ATA--T-- 1458
Query 1268 AACAACTGGGTTCTCAGAGGATGTAACATCCAATCCGCCTGTTCCATTGATAGGATTACC 1327
| | | ||||||||||||||||||| |||||| |||||||||||||| ||||
Sbjct 1459 ------T---T-CACAGAGGATGTAACATCCAACCCGCCTCTTCCATTGATAGGACTACC 1508
Query 1328 TTCACAATCACAGTTTCAGGCTTTCAGG-AGCTCTTCTTCTAGTTTGATGAACATAGACC 1386
||||||||||||||||||||||| | || ||||||| ||||||||||| |||||| ||||
Sbjct 1509 TTCACAATCACAGTTTCAGGCTT-CGGGGAGCTCTTTTTCTAGTTTGACGAACATTGACC 1567
Query 1387 CGAC 1390
||||
Sbjct 1568 CGAC 1571
Score = 444 bits (240), Expect = 2e-123
Identities = 292/318 (92%), Gaps = 0/318 (0%)
Strand=Plus/Plus
Query 1484 TGAGGAAGATTCAAGCATGGAAACATTTCATGATCCTCTGACCATCCAAGACAGGACAAG 1543
||||||||||| ||||| ||| ||||||| |||||||| | ||||||||| | |||||||
Sbjct 1674 TGAGGAAGATTTAAGCACGGAGACATTTCTTGATCCTCAGGCCATCCAAGGCTGGACAAG 1733
Query 1544 TGTGGAGCATCAAGTTGCACCGACTACTATTACACTAACTATCTACTTGCACGATGGGGG 1603
||||| |||| ||| |||||||||||| ||||||||||||||||||||| ||||||| ||
Sbjct 1734 TGTGGGGCATGAAGCTGCACCGACTACAATTACACTAACTATCTACTTGGACGATGGTGG 1793
Query 1604 GTCTGTGATACCGGTAGATATTCCTTTTAGATCAGACCAAACCGTCAGAGACATCCGCAA 1663
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 GTCTGTGACACCGGTATATATTCCTTTTAGATCAGACCAAACCGTCAGAGACATCCGCAA 1853
Query 1664 TGCCATTGACGAGCGAACACCAGATAACGACAGAGATTACTATTTGCAATCAGTGGGTGG 1723
|||||||||||||| |||||||| |||| ||||| ||||| |||||| |||||||||||
Sbjct 1854 TGCCATTGACGAGCTAACACCAGCTAACAACAGATATTACGATTTGCGCTCAGTGGGTGG 1913
Query 1724 AGAAGATGATTGCAAGGATATGAATGCAACTGTAGGAAAAATTTGTAAGAGTGGTTTTAC 1783
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1914 AGAAGATGATTGCAGGGATATGAATGCAACTGTAGGCAAAATTTGTAAGAGTGGTTCTAC 1973
Query 1784 AACTCTCCACCAGGTCTT 1801
||||||||||||||||||
Sbjct 1974 AACTCTCCACCAGGTCTT 1991
Score = 374 bits (202), Expect = 2e-102
Identities = 343/405 (85%), Gaps = 34/405 (8%)
Strand=Plus/Plus
Query 1 TCCCGCCC-AATTTGAAGACGACGATGGCTGATCCAACGGAAGTGAACCGAATCTGCGAC 59
|||||||| ||||| |||||||||||| || |||||| ||||||| |||||||| ||||
Sbjct 32 TCCCGCCCAAATTT-AAGACGACGATGACTAATCCAATGGAAGTGGACCGAATCAGCGAT 90
Query 60 GAAACTGGAGCATCTCGAGAAGAAGCACTCTATTACCTCGAAGGATACGATTGGAATTTG 119
||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 91 GAAACTGGAGCATATCGAGAAGAAGCACTCTATTACCTCGAAGCATACGACTGGAATTTA 150
Query 120 GCTACGGCGGTGGAAGCTTGCCGCGTCAAAACCTTGCCTTCCGTCAAAGTCAAATCTTCG 179
||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 151 GCTCCGGCGATGGAAGCTTGCGGCGTCAAAACCTTGCCTTCCGTCAAGGTCAAATCTTCA 210
Query 180 CCGG-AGATTTCAGTTA-ACGAGCAATCCACGGCGGCGGAGTCTTCAGCTACTCCAGTAA 237
|||| || ||||||||| | ||||| |||||||||| ||| | ||||||||||||| |||
Sbjct 211 CCGGTAG-TTTCAGTTACA-GAGCAGTCCACGGCGGAGGAATATTCAGCTACTCCATTAA 268
Query 238 CGATAAATCCACCTCGGGTTTCGAATCAGGGTCCGTCAACACCGCCAAGATCGATCAATT 297
|||||| ||||||||||||||||||||||| ||| || | | ||||||||||
Sbjct 269 CGATAATTCCACCTCGGGTTTCGAATCAGGATCC---AA----G--A---TCGATCAATT 316
Query 298 ATCCAAGTCGGATTTCGAATCAGATT-CCGCCAAGAAAAAG--G--AT-C-G------TT 344
||||||||| || |||||||| | || |||||||||||||| | || | | ||
Sbjct 317 ATCCAAGTCTGACTTCGAATCCG-TTGCCGCCAAGAAAAAGAAGCCATTCAGGACGGGTT 375
Query 345 TTGAATCCGGCGAAGGAACTATCGTC-TGAATCGAAGCAAGAACG 388
||||||||| || ||||||||||| | ||||| ||||||||||||
Sbjct 376 TTGAATCCGCCGCAGGAACTATCG-CATGAATTGAAGCAAGAACG 419
Score = 307 bits (166), Expect = 2e-82
Identities = 325/395 (82%), Gaps = 38/395 (10%)
Strand=Plus/Plus
Query 399 CGCTTCAATTGGGATGTGGAGAGAGCCGGGGACCATTACTGTAACCAGCGATATTCGCAG 458
|||||||||||||| |||||||||||||||| ||| |||| | | | ||| | | |||
Sbjct 484 CGCTTCAATTGGGACGTGGAGAGAGCCGGGGCCCAATACTATGAGGATCGAGA-T--CAG 540
Query 459 CAGCGTACTTCATATGCCGATGATTGGGATATTCCGGAGATTGATCAGTCGTATTTGCAG 518
||||||||||| || |||| | | || ||||||||||||||||||||||||||
Sbjct 541 CAGCGTACTTC--AT----ATGA-T-CG-TA---CGGAGATTGATCAGTCGTATTTGCAG 588
Query 519 CAGTTTCAAGAGGGTTATATGCCACCGATGATTGGGGTTTCGAATTTGGAAGGATTCTCA 578
| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 589 CGGTTTCAAGAGGGTTATACGCC---GATGATTGGGGTTTCGAATTTGGAAGGATTCTCA 645
Query 579 CAAGATGAAACATCCACGGCGTTGGCTATGGATTTGATGGACCATAGTGCTCCGCCTCTT 638
||| |||||||||| || | |||||||||||| | ||||||||||||||||||
Sbjct 646 CAAAATGAAACATCGAC----T-----ATGGATTTGATGCAGCATAGTGCTCCGCCTCTT 696
Query 639 CCATCATTAGATTTACCTTCACTATCTCAGTTTCATGCTTCTCTTGGCTATCAAATCGGC 698
||||| ||| ||||||||||| |||||||||||||| |||| |||| |||||| | ||
Sbjct 697 CCATCGTTACATTTACCTTCAGAATCTCAGTTTCATGATTCTGTTGGTTATCAATTAGGG 756
Query 699 -A--ACTCTTCTTCCT---CTG-ATTTGATGAACGTTGATGTGGATGAGATGGGAGATTT 751
| |||||||||| | ||| ||| |||||||||||||||||||||| | |||||| |
Sbjct 757 GACCACTCTTCTTCTTTTTCTGGATT-GATGAACGTTGATGTGGATGAGTTTGGAGATGT 815
Query 752 ACACGATGTACCTATAATGTCTTC--C-TCTCAAG 783
| ||||| |||||||||||||||| | |||||||
Sbjct 816 ATACGATATACCTATAATGTCTTCATCGTCTCAAG 850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90611983725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5