BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg933883 Length=1831 Score E Sequences producing significant alignments: (Bits) Value AT2G33010.1 | Symbols: | Ubiquitin-associated (UBA) protein | ... 510 2e-143 > AT2G33010.1 | Symbols: | Ubiquitin-associated (UBA) protein | chr2:14010838-14013246 FORWARD LENGTH=2004 Length=2004 Score = 510 bits (276), Expect = 2e-143 Identities = 502/604 (83%), Gaps = 43/604 (7%) Strand=Plus/Plus Query 789 ATTCAGGGAAGTAGCACTTCTGCTGAAAACAAGGAAGACCACCCTCCGCCATATAATCTT 848 |||||||||||||||| ||||||| ||||| |||||||||||| |||||| | ||| || Sbjct 1009 ATTCAGGGAAGTAGCAGTTCTGCTCAAAACTTGGAAGACCACCCACCGCCAAACAATATT 1068 Query 849 GATAGAATCTGCAGTGAAACTGGAGTGTGTCGAAATGAAGCACTCTATTACCTCGAATCC 908 ||||||||||||| ||||||||| |||| |||| ||||||| |||||||||| |||||| Sbjct 1069 GATAGAATCTGCACTGAAACTGGTGTGTCTCGAGGTGAAGCAGTCTATTACCTTGAATCC 1128 Query 909 TTCGATTCTGATTTGGCTACGGCGATTGAGGCTTGCCGCAGTAAAACCTTGCCTCCCCTC 968 |||||| |||||||||| | ||||| |||||||||||||| |||| ||||||| ||||| Sbjct 1129 TTCGATGGTGATTTGGCTTCAGCGATAGAGGCTTGCCGCAGCAAAAACTTGCCTACCCTC 1188 Query 969 AAGGTTAGATCTTTGCCAGTGGTTTCGGTGAATGATATATCCGCGGTACCAGAGTGGGAG 1028 ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1189 AAGGTTAGATCTTCGCCAGTGGTTTCGGTGAATGAGATATCCGCGGTACCAGAGTGGGAG 1248 Query 1029 TCACCAACAGCGAGGCCACTGGTAATGAACTCACGTCGGATTTCGAATGAGATGCGGATT 1088 |||||||||| |||||||||||| ||||| || ||| ||||||||||||| ||| |||| Sbjct 1249 TCACCAACAGAGAGGCCACTGGTGATGAATTCTTGTCCGATTTCGAATGAGCTGCAGATT 1308 Query 1089 CAGCCAGAGCAACTTCCGCCAAAGATAGAGGAACAATCGTCTGGATCCAATGCTGTAAAA 1148 |||||||||||||| |||| ||| | ||||||| | || ||| || | Sbjct 1309 CAGCCAGAGCAACTACCGCTAAACAAAGAGGAA-A-TC------ATC-AA------A--- 1350 Query 1149 ATCAAGGACTTCTGTGATATTGTTGGAACACATCCAGATGTCGCAGTCGCTTACCTCGAC 1208 ||| |||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 1351 --CAA----TTCTGTGAGATTGTTGGATTGCATCCAGATGTCGCAGTCGCTTACCTCGAG 1404 Query 1209 CGCTGCAAATGGCA-TGTACAAGAGGCCATCAACTATTTCATGGACGAGGGTATACGTCC 1267 || ||| ||||| | | |||||| |||||| ||||||||||| | |||| ||| | Sbjct 1405 CGTTGCCAATGG-AGTTTACAAGTTGCCATCGACTATTTCATGAATGAGGC-ATA--T-- 1458 Query 1268 AACAACTGGGTTCTCAGAGGATGTAACATCCAATCCGCCTGTTCCATTGATAGGATTACC 1327 | | | ||||||||||||||||||| |||||| |||||||||||||| |||| Sbjct 1459 ------T---T-CACAGAGGATGTAACATCCAACCCGCCTCTTCCATTGATAGGACTACC 1508 Query 1328 TTCACAATCACAGTTTCAGGCTTTCAGG-AGCTCTTCTTCTAGTTTGATGAACATAGACC 1386 ||||||||||||||||||||||| | || ||||||| ||||||||||| |||||| |||| Sbjct 1509 TTCACAATCACAGTTTCAGGCTT-CGGGGAGCTCTTTTTCTAGTTTGACGAACATTGACC 1567 Query 1387 CGAC 1390 |||| Sbjct 1568 CGAC 1571 Score = 444 bits (240), Expect = 2e-123 Identities = 292/318 (92%), Gaps = 0/318 (0%) Strand=Plus/Plus Query 1484 TGAGGAAGATTCAAGCATGGAAACATTTCATGATCCTCTGACCATCCAAGACAGGACAAG 1543 ||||||||||| ||||| ||| ||||||| |||||||| | ||||||||| | ||||||| Sbjct 1674 TGAGGAAGATTTAAGCACGGAGACATTTCTTGATCCTCAGGCCATCCAAGGCTGGACAAG 1733 Query 1544 TGTGGAGCATCAAGTTGCACCGACTACTATTACACTAACTATCTACTTGCACGATGGGGG 1603 ||||| |||| ||| |||||||||||| ||||||||||||||||||||| ||||||| || Sbjct 1734 TGTGGGGCATGAAGCTGCACCGACTACAATTACACTAACTATCTACTTGGACGATGGTGG 1793 Query 1604 GTCTGTGATACCGGTAGATATTCCTTTTAGATCAGACCAAACCGTCAGAGACATCCGCAA 1663 |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1794 GTCTGTGACACCGGTATATATTCCTTTTAGATCAGACCAAACCGTCAGAGACATCCGCAA 1853 Query 1664 TGCCATTGACGAGCGAACACCAGATAACGACAGAGATTACTATTTGCAATCAGTGGGTGG 1723 |||||||||||||| |||||||| |||| ||||| ||||| |||||| ||||||||||| Sbjct 1854 TGCCATTGACGAGCTAACACCAGCTAACAACAGATATTACGATTTGCGCTCAGTGGGTGG 1913 Query 1724 AGAAGATGATTGCAAGGATATGAATGCAACTGTAGGAAAAATTTGTAAGAGTGGTTTTAC 1783 |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 1914 AGAAGATGATTGCAGGGATATGAATGCAACTGTAGGCAAAATTTGTAAGAGTGGTTCTAC 1973 Query 1784 AACTCTCCACCAGGTCTT 1801 |||||||||||||||||| Sbjct 1974 AACTCTCCACCAGGTCTT 1991 Score = 374 bits (202), Expect = 2e-102 Identities = 343/405 (85%), Gaps = 34/405 (8%) Strand=Plus/Plus Query 1 TCCCGCCC-AATTTGAAGACGACGATGGCTGATCCAACGGAAGTGAACCGAATCTGCGAC 59 |||||||| ||||| |||||||||||| || |||||| ||||||| |||||||| |||| Sbjct 32 TCCCGCCCAAATTT-AAGACGACGATGACTAATCCAATGGAAGTGGACCGAATCAGCGAT 90 Query 60 GAAACTGGAGCATCTCGAGAAGAAGCACTCTATTACCTCGAAGGATACGATTGGAATTTG 119 ||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 91 GAAACTGGAGCATATCGAGAAGAAGCACTCTATTACCTCGAAGCATACGACTGGAATTTA 150 Query 120 GCTACGGCGGTGGAAGCTTGCCGCGTCAAAACCTTGCCTTCCGTCAAAGTCAAATCTTCG 179 ||| ||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct 151 GCTCCGGCGATGGAAGCTTGCGGCGTCAAAACCTTGCCTTCCGTCAAGGTCAAATCTTCA 210 Query 180 CCGG-AGATTTCAGTTA-ACGAGCAATCCACGGCGGCGGAGTCTTCAGCTACTCCAGTAA 237 |||| || ||||||||| | ||||| |||||||||| ||| | ||||||||||||| ||| Sbjct 211 CCGGTAG-TTTCAGTTACA-GAGCAGTCCACGGCGGAGGAATATTCAGCTACTCCATTAA 268 Query 238 CGATAAATCCACCTCGGGTTTCGAATCAGGGTCCGTCAACACCGCCAAGATCGATCAATT 297 |||||| ||||||||||||||||||||||| ||| || | | |||||||||| Sbjct 269 CGATAATTCCACCTCGGGTTTCGAATCAGGATCC---AA----G--A---TCGATCAATT 316 Query 298 ATCCAAGTCGGATTTCGAATCAGATT-CCGCCAAGAAAAAG--G--AT-C-G------TT 344 ||||||||| || |||||||| | || |||||||||||||| | || | | || Sbjct 317 ATCCAAGTCTGACTTCGAATCCG-TTGCCGCCAAGAAAAAGAAGCCATTCAGGACGGGTT 375 Query 345 TTGAATCCGGCGAAGGAACTATCGTC-TGAATCGAAGCAAGAACG 388 ||||||||| || ||||||||||| | ||||| |||||||||||| Sbjct 376 TTGAATCCGCCGCAGGAACTATCG-CATGAATTGAAGCAAGAACG 419 Score = 307 bits (166), Expect = 2e-82 Identities = 325/395 (82%), Gaps = 38/395 (10%) Strand=Plus/Plus Query 399 CGCTTCAATTGGGATGTGGAGAGAGCCGGGGACCATTACTGTAACCAGCGATATTCGCAG 458 |||||||||||||| |||||||||||||||| ||| |||| | | | ||| | | ||| Sbjct 484 CGCTTCAATTGGGACGTGGAGAGAGCCGGGGCCCAATACTATGAGGATCGAGA-T--CAG 540 Query 459 CAGCGTACTTCATATGCCGATGATTGGGATATTCCGGAGATTGATCAGTCGTATTTGCAG 518 ||||||||||| || |||| | | || |||||||||||||||||||||||||| Sbjct 541 CAGCGTACTTC--AT----ATGA-T-CG-TA---CGGAGATTGATCAGTCGTATTTGCAG 588 Query 519 CAGTTTCAAGAGGGTTATATGCCACCGATGATTGGGGTTTCGAATTTGGAAGGATTCTCA 578 | ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 589 CGGTTTCAAGAGGGTTATACGCC---GATGATTGGGGTTTCGAATTTGGAAGGATTCTCA 645 Query 579 CAAGATGAAACATCCACGGCGTTGGCTATGGATTTGATGGACCATAGTGCTCCGCCTCTT 638 ||| |||||||||| || | |||||||||||| | |||||||||||||||||| Sbjct 646 CAAAATGAAACATCGAC----T-----ATGGATTTGATGCAGCATAGTGCTCCGCCTCTT 696 Query 639 CCATCATTAGATTTACCTTCACTATCTCAGTTTCATGCTTCTCTTGGCTATCAAATCGGC 698 ||||| ||| ||||||||||| |||||||||||||| |||| |||| |||||| | || Sbjct 697 CCATCGTTACATTTACCTTCAGAATCTCAGTTTCATGATTCTGTTGGTTATCAATTAGGG 756 Query 699 -A--ACTCTTCTTCCT---CTG-ATTTGATGAACGTTGATGTGGATGAGATGGGAGATTT 751 | |||||||||| | ||| ||| |||||||||||||||||||||| | |||||| | Sbjct 757 GACCACTCTTCTTCTTTTTCTGGATT-GATGAACGTTGATGTGGATGAGTTTGGAGATGT 815 Query 752 ACACGATGTACCTATAATGTCTTC--C-TCTCAAG 783 | ||||| |||||||||||||||| | ||||||| Sbjct 816 ATACGATATACCTATAATGTCTTCATCGTCTCAAG 850 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90611983725 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5