BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933884
Length=1024
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33040.1 | Symbols: ATP3 | gamma subunit of Mt ATP synthase ... 1714 0.0
> AT2G33040.1 | Symbols: ATP3 | gamma subunit of Mt ATP synthase
| chr2:14018690-14021183 REVERSE LENGTH=1402
Length=1402
Score = 1714 bits (928), Expect = 0.0
Identities = 989/1019 (97%), Gaps = 1/1019 (0%)
Strand=Plus/Plus
Query 7 CGATCAATCCTTTAATCAATGGCAATGGCTGTTTTCCGTCGTGAAGGGAGGCGTCTCCTC 66
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 119 CGATCAATCCTTTAATCAATGGCAATGGCTGTTTTCCGTCGCGAAGGGAGGCGTCTCCTC 178
Query 67 CCTTCAATCGCTGCTCGCCCAATCGCTGCTATCCGATCTCCTCTCTCTTCTGACCAGGAG 126
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CCTTCAATCGCCGCTCGCCCAATCGCTGCTATCCGATCTCCTCTCTCTTCTGACCAGGAG 238
Query 127 GAAGGACTTCTTGGAGTTCGATCTATCTCAACTCAAGTGGTGCGTAACCGCATGAAGAGT 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GAAGGACTTCTTGGAGTTCGATCTATCTCAACTCAAGTGGTGCGTAACCGCATGAAGAGT 298
Query 187 GTTAAGAACATCCAAAAGATCACAAAGGCAATGAAGATGGTTGCTGCTTCCAAGCTTAGA 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GTTAAGAACATCCAAAAGATCACAAAGGCAATGAAGATGGTTGCTGCTTCCAAGCTTAGA 358
Query 247 GCAGTTCAAGGCAGAGCTGAGAACTCCCGTGGACTTTGGCAGCCATTTACTGCACTTCTA 306
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GCAGTTCAAGGCCGAGCTGAGAACTCCCGTGGACTTTGGCAGCCATTTACTGCACTTCTA 418
Query 307 GGAGATAATCCCAGCATTGATGTTAAGAAGAGCGTCGTGGTCACTCTCTCTTCTGACAAG 366
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 419 GGAGATAATCCCAGCATTGATGTAAAGAAGAGTGTGGTGGTCACTCTCTCTTCTGACAAG 478
Query 367 GGTCTCTGTGGTGGAATTAACTCCACTGTTGTTAAAGTGAGCAGGGCTCTGTACAAATTG 426
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 479 GGTCTCTGTGGTGGAATCAACTCCACTGTCGTTAAAGTGAGCAGGGCTCTGTACAAATTG 538
Query 427 AATTCTGGTCCTGAAAAAGAAGTTCAGTTTGTTATTGTCGGAGAGAAAGCAAAGGCTATA 486
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AATGCTGGTCCTGAAAAGGAAGTTCAGTTTGTTATTGTCGGAGAGAAAGCAAAGGCTATA 598
Query 487 ATGTTTCGTGACTCGAAGAACGACATTGTCCTCTCTGTAACAGAGCTGAATAAGAACCCA 546
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATGTTTCGTGACTCAAAGAACGACATTGTCCTCTCTGTAACAGAGCTGAATAAGAACCCA 658
Query 547 CTCAATTATGCTCAGGTCTCAGTTCTAGCTGATGACATCCTGAAGAACGTTGAATTTGAT 606
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CTCAATTATGCTCAGGTGTCAGTTCTAGCTGATGACATCCTGAAGAACGTTGAATTTGAT 718
Query 607 GCTTTGCGCATTGTCTACAACAAGTTCCATTCAGTTGTTGCATTTCTACCAACTGTCTCC 666
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 719 GCTTTGCGCATTGTCTACAACAAGTTCCATTCAGTTGTCGCATTTCTGCCAACTGTGTCC 778
Query 667 ACTGTTTTGTCACCCGAGATAATTGAGAAAGAGTCTGAAATTGGAGGAAAACTTGGCGAG 726
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 779 ACTGTTTTGTCACCTGAGATTATTGAGAAGGAGTCTGAAATTGGAGGAAAACTTGGCGAG 838
Query 727 CTCGACTCGTATGAGATTGAAGGTGGTGAAACAAAGGGAGAAATATTGCAGAATCTGGCC 786
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 839 CTTGACTCATATGAGATTGAAGGTGGGGAAACAAAGGGAGAAATATTGCAGAATCTGGCC 898
Query 787 GAGTTCCAATTCTCTTGTGTGATGTTCAATGCGGTTTTGGAGAATGCATGTAGTGAGATG 846
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 899 GAGTTCCAATTCTCTTGTGTGATGTTCAATGCGGTTCTGGAGAATGCATGTAGTGAGATG 958
Query 847 GGAGCAAGAATGTCTGCCATGGACAGCTCAAGCAGAAACGCAGGAGAAATGCTTGACCGT 906
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 959 GGAGCAAGAATGTCTGCCATGGACAGCTCAAGCAGAAACGCAGGAGAAATGCTCGACCGT 1018
Query 907 CTCACCCTCACTTACAACAGGACTCGTCAAGCTTCCATTACAACAGAGCTTATCGAGATT 966
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1019 CTCACCCTCACATACAACAGGACTCGTCAAGCTTCTATTACAACAGAGCTTATTGAGATT 1078
Query 967 ATCTCTGGAGCTTCTGCACTTGAAGCCGCTAAATAAGCACATCCGTGTTAGTTCT-TTT 1024
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| |||
Sbjct 1079 ATCTCTGGAGCTTCTGCTCTTGAAGCTGCTAAATAAGCCCATCCGTGTTAGTTCTCTTT 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50183912853
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5