BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933887
Length=794
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33090.1 | Symbols: | Transcription elongation factor (TFII... 782 0.0
AT2G33300.1 | Symbols: | Transcription elongation factor (TFII... 337 1e-91
> AT2G33090.1 | Symbols: | Transcription elongation factor (TFIIS)
family protein | chr2:14035215-14035961 REVERSE LENGTH=747
Length=747
Score = 782 bits (423), Expect = 0.0
Identities = 653/762 (86%), Gaps = 24/762 (3%)
Strand=Plus/Plus
Query 21 ATGGAAGCTCACGGTTTGTTCAACTCCTCCTGGATGAATACTCTTTCTTCCAGCGGAAGA 80
|||| || ||||||| ||||| |||||||| |||||| |||||||||||||| |||||||
Sbjct 1 ATGGTAGATCACGGTATGTTCTACTCCTCCAGGATGAGTACTCTTTCTTCCAACGGAAGA 60
Query 81 ---GACGCTTATACTTGCAACAAAGCTCTTCCCTTGAATCTGAAGAAACCTAATGTTGTT 137
||||||||||||||||| |||||||||| ||||| |||||| |||||||||||||||
Sbjct 61 GGCGACGCTTATACTTGCAAAAAAGCTCTTCACTTGACTCTGAATAAACCTAATGTTGTT 120
Query 138 AAAGCAAGTTCGGAGTTGAAGAAGAACGAACATCAGAGATCTCATGATTTTGCGGCAGAG 197
|||||| ||||||| ||||||||||| |||||||||| ||||| ||||||||||||||||
Sbjct 121 AAAGCATGTTCGGATTTGAAGAAGAATGAACATCAGATATCTCGTGATTTTGCGGCAGAG 180
Query 198 ACTAAGAAAAAGACTGAGTTTTTGGTGCCGAAGAAGAAC-ACAGATGAAAGATCTAAGAC 256
||||||||||||||||||||||||||| |||||||||| || ||||| |||||||||||
Sbjct 181 ACTAAGAAAAAGACTGAGTTTTTGGTGTTGAAGAAGAACAAC-GATGAGAGATCTAAGAC 239
Query 257 TCGTGAAGAAACTGGAGAGAAGAAGCAATCGGCTCTACCTATGAAACTTTCTAAAAACCC 316
| |||||| |||| |||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 240 TGGTGAAGTAACTAGAGAGAAGAAGCAATCGGCTCTACCTCTGAAACTTTCTAAAACCCC 299
Query 317 TAGATTTGGGGTTCATGGAACGGGAGAGATTAAGCAAAATTTGAAGAAACCTGGCCTTTC 376
|||| || ||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct 300 TAGA--------TC-TGGAACGGGAGAGATTAAGCAAACTTTGAAGAAGCGTGGCCTTTC 350
Query 377 TAAGTCTGTTCCAGCAACATCAAGGCT-ACTCAAGTTGAAGAAGCATCAACAGGCGAAAG 435
||||||||||||| |||||| ||||| | |||||||||||||||| | | | |||||
Sbjct 351 CAAGTCTGTTCCAGAAACATCGAGGCTGA-TCAAGTTGAAGAAGCAGCCGCCTGTGAAAG 409
Query 436 TATCTGA-AGACCCTAAATA-TTGTCATGTCTTGAAGAAGAACGACACGGAGAC-TCTAG 492
||||||| | | ||| || | ||||| |||||||| ||||||||||||||| || | | |
Sbjct 410 TATCTGACA-AACCT-AAGAGTTGTCCTGTCTTGACGAAGAACGACACGGATACGT-TGG 466
Query 493 AACTGTTCGAAATAGCCAAGAAATCAGCTGATGTGGCTAACACAAAGGGTCTTCTCGCGG 552
|||||||||| || ||||| ||||| |||||| | || ||| ||||||| | ||||||
Sbjct 467 AACTGTTCGAGATCGCCAAAAAATCTGCTGATTTTGCCAACGCAAAGGGAATACTCGCGT 526
Query 553 CTGAAGTAGAGACATCAATCTGCGTAGACACACTCTCTTTACTCATGGAGTTCCCCATAA 612
||||||||||||||||||| || ||||| || ||| || | ||| ||||||| ||||| |
Sbjct 527 CTGAAGTAGAGACATCAATGTGTGTAGATACCCTCACTCTGCTCTTGGAGTTTCCCATCA 586
Query 613 GCGCAACTGCTATTGAAACAA-GACGGATCATGGTGAGGCTTGAGAATCTTACAAAACAC 671
|||||| | ||| ||||||| || | ||||||| ||||| ||| ||||||||||||||
Sbjct 587 GCGCAAGAGATATGGAAACAAGGA-AGCTCATGGTTAGGCTAGAGCATCTTACAAAACAC 645
Query 672 AAGAACCGAAAAATCTGCAATTCTGCAGCAGCACTTCTTCAATGTTGGAGGCATAGCATC 731
|||||||||||||| ||||||||||| || ||||||||||||||||||| | || |||
Sbjct 646 AAGAACCGAAAAATATGCAATTCTGCTTCAAAACTTCTTCAATGTTGGAGGGAGAGTATC 705
Query 732 AGAGATCAAGAACTGAGAGAGTCCCGTAAAACGCAAGGCTAA 773
||||| ||| |||| ||||||||||||||||| |||||||||
Sbjct 706 AGAGAGCAACAACTCAGAGAGTCCCGTAAAACTCAAGGCTAA 747
> AT2G33300.1 | Symbols: | Transcription elongation factor (TFIIS)
family protein | chr2:14113025-14114200 FORWARD LENGTH=1176
Length=1176
Score = 337 bits (182), Expect = 1e-91
Identities = 295/350 (84%), Gaps = 6/350 (2%)
Strand=Plus/Plus
Query 448 CTAAATATTGTCATGTCTTGAAGAAGAACGACACGGAGACT-CTAGAACTGTTCGAAATA 506
||||| ||||| |||||||||||||||||||| ||| | | ||||||||||| ||
Sbjct 611 CTAAAGGTTGTCCTGTCTTGAAGAAGAACGACAAGGA-TTTGTTGGAACTGTTCGAGATC 669
Query 507 GCCAAGAAATCAGCTGATGTGGCTAACACAAAGGGTCTTCTCGCGGCTGAAGTAGAGACA 566
||||| ||||| |||||| | || ||| ||||||| | |||||| |||||||||| |||
Sbjct 670 GCCAAAAAATCTGCTGATTTTGCCAACGCAAAGGGAATCCTCGCGTCTGAAGTAGAAACA 729
Query 567 TCAATCTGCGTAGACACACTCTCTTTACTCATGGAGTTCCCCATAAGCGCAACTGCTATT 626
||||| |||||||| || ||| |||| ||| ||||||||||||| ||||||| |||||
Sbjct 730 TCAATGTGCGTAGATACCCTCGCTTTGCTCTTGGAGTTCCCCATCAGCGCAAGAGCTATG 789
Query 627 GAAACAA-GACGGATCATGGTGAGGCTTGAGAATCTTACAAAACACAAGAACCGAAAAAT 685
||||||| || | ||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 790 GAAACAAGGA-AGCTCATGGTTAGGCTAGAGAATCTTACAAAACACAAGAACCGAAAAAT 848
Query 686 CTGCAATTCTGCAGCAGCACTTCTTCAATGTTGGAGGCATAGCATCAGAGATCAAGAACT 745
|||||||||| || ||||||||||||||||||||| || |||||||||||| ||||
Sbjct 849 ATGCAATTCTGTTTCAAAACTTCTTCAATGTTGGAGGCAGAGTATCAGAGATCAACAACT 908
Query 746 GAGAGAGTCCCGTAAAACGCAAGGCTAA-TGTCACAAGAGAATCTTCAAA 794
||||||||||||||||| ||||||||| |||||| || |||| || |||
Sbjct 909 CAGAGAGTCCCGTAAAACTCAAGGCTAAATGTCACTAGGGAAT-TTAAAA 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38630059043
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5