BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933891

Length=347
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G33130.1 | Symbols: RALFL18, RALF18 | ralf-like 18 | chr2:14...   401    2e-111


> AT2G33130.1 | Symbols: RALFL18, RALF18 | ralf-like 18 | chr2:14046521-14046832 
REVERSE LENGTH=312
Length=312

 Score =  401 bits (217),  Expect = 2e-111
 Identities = 283/314 (90%), Gaps = 7/314 (2%)
 Strand=Plus/Plus

Query  19   ATGATGAATTACATGAAGCTCTTGATCATCGC--CG-TGATCATCTCGGCGGCTTTGTTT  75
            ||||||||| ||||||||||||||||||||||   | ||||||||||||| |||||| ||
Sbjct  1    ATGATGAATAACATGAAGCTCTTGATCATCGCTGTGATGATCATCTCGGCAGCTTTGCTT  60

Query  76   CCAGC-ATTGGTGGTCGGATCTCGTCCGGTAAAATGTAACAATTGCAAT-GACGGTGGAG  133
            |||||  || ||||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct  61   CCAGCGCTT-GTGGTCGGATCTCGTCCGGTAAAATGTGACAATTGC-ATGGACGGTGGAG  118

Query  134  AAAAAGAAAAGATCATGAAGATGAATTCAGGTATGGATGTGAACCATAGGATACTTCAAG  193
            |||||||| ||||||||||||||| ||||||| | ||||||| |||||||||||||||||
Sbjct  119  AAAAAGAAGAGATCATGAAGATGAGTTCAGGTGTAGATGTGAGCCATAGGATACTTCAAG  178

Query  194  CTAAGAGATATATAAATTACGATGCATTGAAGAAAAACAAACCAGCTAAACCAGATGGTA  253
            ||||||||| |||| ||||||| |||||||||||||||  |||||| |||||||||||||
Sbjct  179  CTAAGAGATTTATAGATTACGAAGCATTGAAGAAAAACTTACCAGCCAAACCAGATGGTA  238

Query  254  AACCGGATAAACCGGACAACAAATACCGACGAGGTTGCACCGCCGCTACGGGATGCTACC  313
            |||||||||||||||| |||||||||||||| |||||||  |||||||| ||||| ||||
Sbjct  239  AACCGGATAAACCGGATAACAAATACCGACGTGGTTGCAGTGCCGCTACAGGATGTTACC  298

Query  314  GCTTTACGAATTAA  327
            ||||||| ||||||
Sbjct  299  GCTTTACAAATTAA  312



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16236482927


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5