BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933893
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33160.1 | Symbols: | glycoside hydrolase family 28 protein... 1921 0.0
AT2G40310.1 | Symbols: | Pectin lyase-like superfamily protein... 248 9e-65
> AT2G33160.1 | Symbols: | glycoside hydrolase family 28 protein
/ polygalacturonase (pectinase) family protein | chr2:14053404-14056246
FORWARD LENGTH=1995
Length=1995
Score = 1921 bits (1040), Expect = 0.0
Identities = 1156/1213 (95%), Gaps = 4/1213 (0%)
Strand=Plus/Plus
Query 26 ATGGCGTCTAGGGTTCTTCTGATTTTGTGTCTGTCTTCTCTCTTCTTCTTCCTCGCCGCT 85
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1 ATGGCGTCTAGGGTTCTTCTGATTTTGTGTGTGCCTTCTCTCTTCTTCTTCCTCGCCGCT 60
Query 86 TCCACGAAGGAATATCCCAGCCAAGCAAAAATCTTTGACGTCAGAAACTATGGTGCTCAC 145
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
Sbjct 61 TCCACGAAGGAATATCCCGGCCAACCAAAAATCTTTGACGTCAGAAACTATGGTGCTCGC 120
Query 146 GGTGATGGCCGAAGAGATAACGCTTTCT-CGTTTACAAAGGCGTGGAACGAAGCTTGCCA 204
| ||| ||| ||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 121 GCAGATAGCCAAAGAGATAACGCTTT-TGCGTTTACAAAGGCGTGGAACGAAGCTTGCCA 179
Query 205 ATGGAGTAACGGAAGATCAACGGTCTATATTCCTCCCGGAATATTCTATCTCCGTCAAGT 264
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 180 ATGGAGTTACGGAAGATCAACGGTCTATATTCCTTCCGGAATATTCTATCTCCGTCAAGT 239
Query 265 AACGTTCACTGGTCCTTGCAAAAACCCTATTACTTTTATTATCAGAGGAACTTTATTGGC 324
||| ||| ||||||||||||||| | |||| |||||| ||||||||||||||||||||||
Sbjct 240 AACATTCTCTGGTCCTTGCAAAAGCTCTATAACTTTTTTTATCAGAGGAACTTTATTGGC 299
Query 325 TCCTCGTAATCCTTACGCTATCAAACAAGATGAATGGATACTTTTCAAGTACGTCGATAA 384
|||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 300 TCCTCGTAATCCTTACGCCATCAACCAAGAAGAATGGATACTTTTCAAGTACGTCGATAA 359
Query 385 TCTCACGGTTACTGGCGGTGGATTACTTGACGGCCAAGGATCTTATTCTTGGCCTCTCAA 444
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 TCTCACTGTTACTGGCGGTGGATTACTTGACGGTCAAGGATCTTATTCTTGGCCTCTCAA 419
Query 445 TGATTGTAACAAGAACACCAATTGTCGTACACTAGCTATGAACATTGGGTTTGCTTTTGT 504
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGATTGTAACAAAAACACTAATTGTCGTACACTAGCTATGAACATTGGGTTTGCTTTTGT 479
Query 505 TAAATCATCGAAGATCAACGGTCTAAGATCTATCAACAGCAAAATGGGACATTTCAACTT 564
||||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||
Sbjct 480 TAAATCATCGAAGATCAACGGTCTAAGGTCCATCAATAGCAAAATGGGGCATTTCAACTT 539
Query 565 ATTCTCGGTCGAGGATTTTAACATTACAGGCGTTACCATCACTGCTCCTGGAGATAGCCC 624
|||||| || ||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 540 ATTCTCCGTTGAGGATTTTAACATTACCGGAGTTACCATCACTGCTCCCGGAGATAGCCC 599
Query 625 TAATACCGACGGAATCAAGATCGGGAAATCTAGCCATATG-AATATCTTCAACGTCACTA 683
|||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||
Sbjct 600 TAATACCGACGGAATCAAGATCGGGAAATCTAGCCATATGCAA-ATCTACAACGTCACTA 658
Query 684 TCGGAACCGGTGACGATTGTATCGCAATCCTTGACGGAACCAGCAATTTGGATATCTCTG 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCGGAACCGGTGACGATTGTATCGCAATCCTTGACGGAACCAGCAATTTGGATATCTCTG 718
Query 744 ATGTCAGGTGCGGACCAGGGCATGGGATTAGTGTCGGGAGCCTTGGGAGATATAAAGAGG 803
||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 719 ATGTCAGATGCGGACCAGGGCATGGTATTAGTGTCGGGAGTCTCGGGAGATATAAAGAGG 778
Query 804 AGAAGAACGTCCAGGGCTTAACAGTCAGAAACTCGATTATCAACGGTACAACTGACGGTT 863
|||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 779 AGAAGAACGTCCAGGGCTTAACCGTCAGAAACTCGATTATCAACGGTACCACAGACGGTT 838
Query 864 TACGTATCAAGACATGGGCTAAGTCGGTATCGCAGATTTCGGTTTCGAATTTCCTCTACG 923
||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||
Sbjct 839 TACGTATCAAGACATGGGCTAAGTCCGTATCGCAGATTTCGGTTTCGAATTTCTTGTACG 898
Query 924 AGAACATCCAAATGATCAATGTTGGAAACCCTATCGTCATTGATCAGCAGTATTGTCCAC 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AGAACATCCAAATGATCAATGTTGGAAACCCTATCGTCATTGATCAGCAGTATTGTCCAC 958
Query 984 ACGGACAATGTGATAGTCCTGGAAAGTATGCTTCTCATGTTCAGATAAAAGACGTCAAGT 1043
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ACGGGCAATGTGATAGTCCTGGAAAGTATGCTTCTCATGTTCAGATAAAAGACGTCAAGT 1018
Query 1044 ATAACAAAATTTGGGGAACTTCGACAAGCAAAGAGGCTTTGAAGATGCAATGTAGTAAAG 1103
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1019 ATAACAATATTTGGGGAACTTCCACAAGCAAAGAGGCTTTGAAGATGCAATGTAGTAAAA 1078
Query 1104 CGTTTCCTTGTCAAGACGTCGAGCTCTCAAATATCAACTTGAAATACGTTGGACGTGACG 1163
||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||
Sbjct 1079 CGTTTCCTTGTCAAGACGTTGAGCTCTCAAATATCAACTTGCACTACGTTGGACGTGACG 1138
Query 1164 GTTTAGTCACGGCTTTGTGTGAGAACGTTGGTGGATCGATTCGTGGCAAGATTGTTCCTG 1223
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1139 GTTTAGTCACGGCTTTGTGTGAGAACGTTGGTGGTTCGATTCGTGGCAAGATTGTTCCTG 1198
Query 1224 CAAATTGCCGGAT 1236
|||||||| ||||
Sbjct 1199 CAAATTGCAGGAT 1211
> AT2G40310.1 | Symbols: | Pectin lyase-like superfamily protein
| chr2:16834065-16835711 FORWARD LENGTH=1215
Length=1215
Score = 248 bits (134), Expect = 9e-65
Identities = 551/742 (74%), Gaps = 70/742 (9%)
Strand=Plus/Plus
Query 275 GGTCCTTGCAAAAACCCTATT-ACTTTTATTATCAGA-GGAACTTTATTGGCTCCTCG-T 331
||||| |||||||| |||||| | || | || || |||||||||||||||||| |
Sbjct 247 GGTCCATGCAAAAATCCTATTGA-ATTCGTCAT-TGATGGAACTTTATTGGCTCCT-GCA 303
Query 332 AATCCTTA-CGCTATCAAACAAGATGA-ATGGAT--ACTTTTCAAGTACGTCGATAATCT 387
||||| || | ||| || |||||| | |||||| || ||| | |||| || | |||||
Sbjct 304 AATCC-TAGTGATATTAAGCAAGAT-ACATGGATCAAC-TTT-AGGTACATCAACAATCT 359
Query 388 CACGGTTA-CTGGCGG-T--GGAT-TACTTGACGGCCAAGGATCTTATTCTTGGCCTCTC 442
| || || ||| | || | |||||||||||||||| | |||||||| |||
Sbjct 360 TTC---TATCT-CCGGTTCCGG-TACACTTGACGGCCAAGGAAAACAATCTTGGCCACTC 414
Query 443 AATGATTGTAACAAGAACA-C-CAATTGTCGTACACTAGCTATGAACAT-TGGG-TTTGC 498
||||| || |||| || | | |||||||| || |||||||||| || | |||| |||||
Sbjct 415 AATGACTGCCACAA-AA-ATCTCAATTGTCCTAAACTAGCTATG-AC-TATGGGATTTGC 470
Query 499 TTTTGTTAA-ATCATCGAAGATCAACGGTC-TAAGATCTA-TCAACAGCAAAATGGGACA 555
|| || || | | || || ||||| | | ||| ||| | |||||||||||||||||||
Sbjct 471 ATTCGTGAACAAC-TCAAATATCAA-AGACATAACATC-ACTCAACAGCAAAATGGGACA 527
Query 556 TTTCAACTTATTCTCGGTCGAGGATTTTAACATTACAGGCGTTACCATCACTGCT-CCTG 614
||||||||| ||||| ||| | | ||||| ||||| ||||| || || || ||| || |
Sbjct 528 TTTCAACTTCTTCTCCGTCCATCACTTTAATATTACCGGCGTCACTATAACAGCTTCC-G 586
Query 615 GAGATAGCCCTAATACCGACGGAATCAAGATCGGGAA-ATCTAGCCATATGAATATCTTC 673
| ||||| ||||| |||||||| |||||||| ||| || |||| | ||| | |||| |
Sbjct 587 GTGATAGTCCTAACACCGACGGTATCAAGAT-GGGTTCATGTAGCAACATGCACATCTCC 645
Query 674 AACGTCA--CTATCGGAACCGGTGACGATTGTATCGCAATCCT-TGACGGAACCAGC-AA 729
||| || | ||||| ||||| ||||||||||| || || || | ||||||| | ||
Sbjct 646 AACA-CAAAC-ATCGGTACCGGAGACGATTGTATTGCCATTCTCTCT-GGAACCA-CTAA 701
Query 730 TTTGGATATCTCTGATGTCAGGTGCGGACCAGGGCATGGGATTAGTGTCGGGAGCCTT-G 788
| ||||||||| |||| | || || || || |||||||| ||||| || || || |
Sbjct 702 CCTCGATATCTCTAATGTTAAATGTGGTCCCGGACATGGGATCAGTGTTGGAAGT-TTAG 760
Query 789 GGA-GATATAAAGAGGAGAA-GAACGTCCAGGGCTTAACAGTCAGAAAC-TCGATTATCA 845
||| || | ||||| ||||| || ||| | ||||||||| ||| || || ||| |||
Sbjct 761 GGAAGA-ACAAAGACGAGAAAGA-CGTGAAAAACTTAACAGTAAGAGACGTC-ATTTTCA 817
Query 846 ACGGTACAACTGACGGT-TTACGTATCAAGACATGGGCTAAG-T-CGG-TATCGCAGATT 901
||||||||| ||| ||| || || |||||||| |||| || | | | | || | ||
Sbjct 818 ACGGTACAAGTGATGGTATT-CGGATCAAGACTTGGG--AATCTTCAGCT-TCAAAAATC 873
Query 902 -TCGGTTTCGAA-TTTCCTCTACGAGAACATCCAAATGATCAATGTTGGAAACCCTATCG 959
||| ||||||| ||| | |||||||| || || ||||| | |||||||| || |||
Sbjct 874 CTCG-TTTCGAACTTTG-TGTACGAGAATATTCAGATGATTGACGTTGGAAAACCAATCA 931
Query 960 TCATTGATCAGCAGTATTGTCC 981
||| |||||| ||||||||||
Sbjct 932 ACATCGATCAGAAGTATTGTCC 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61947472530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5