BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg933893 Length=1260 Score E Sequences producing significant alignments: (Bits) Value AT2G33160.1 | Symbols: | glycoside hydrolase family 28 protein... 1921 0.0 AT2G40310.1 | Symbols: | Pectin lyase-like superfamily protein... 248 9e-65 > AT2G33160.1 | Symbols: | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein | chr2:14053404-14056246 FORWARD LENGTH=1995 Length=1995 Score = 1921 bits (1040), Expect = 0.0 Identities = 1156/1213 (95%), Gaps = 4/1213 (0%) Strand=Plus/Plus Query 26 ATGGCGTCTAGGGTTCTTCTGATTTTGTGTCTGTCTTCTCTCTTCTTCTTCCTCGCCGCT 85 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1 ATGGCGTCTAGGGTTCTTCTGATTTTGTGTGTGCCTTCTCTCTTCTTCTTCCTCGCCGCT 60 Query 86 TCCACGAAGGAATATCCCAGCCAAGCAAAAATCTTTGACGTCAGAAACTATGGTGCTCAC 145 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | Sbjct 61 TCCACGAAGGAATATCCCGGCCAACCAAAAATCTTTGACGTCAGAAACTATGGTGCTCGC 120 Query 146 GGTGATGGCCGAAGAGATAACGCTTTCT-CGTTTACAAAGGCGTGGAACGAAGCTTGCCA 204 | ||| ||| ||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 121 GCAGATAGCCAAAGAGATAACGCTTT-TGCGTTTACAAAGGCGTGGAACGAAGCTTGCCA 179 Query 205 ATGGAGTAACGGAAGATCAACGGTCTATATTCCTCCCGGAATATTCTATCTCCGTCAAGT 264 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 180 ATGGAGTTACGGAAGATCAACGGTCTATATTCCTTCCGGAATATTCTATCTCCGTCAAGT 239 Query 265 AACGTTCACTGGTCCTTGCAAAAACCCTATTACTTTTATTATCAGAGGAACTTTATTGGC 324 ||| ||| ||||||||||||||| | |||| |||||| |||||||||||||||||||||| Sbjct 240 AACATTCTCTGGTCCTTGCAAAAGCTCTATAACTTTTTTTATCAGAGGAACTTTATTGGC 299 Query 325 TCCTCGTAATCCTTACGCTATCAAACAAGATGAATGGATACTTTTCAAGTACGTCGATAA 384 |||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| Sbjct 300 TCCTCGTAATCCTTACGCCATCAACCAAGAAGAATGGATACTTTTCAAGTACGTCGATAA 359 Query 385 TCTCACGGTTACTGGCGGTGGATTACTTGACGGCCAAGGATCTTATTCTTGGCCTCTCAA 444 |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 360 TCTCACTGTTACTGGCGGTGGATTACTTGACGGTCAAGGATCTTATTCTTGGCCTCTCAA 419 Query 445 TGATTGTAACAAGAACACCAATTGTCGTACACTAGCTATGAACATTGGGTTTGCTTTTGT 504 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 420 TGATTGTAACAAAAACACTAATTGTCGTACACTAGCTATGAACATTGGGTTTGCTTTTGT 479 Query 505 TAAATCATCGAAGATCAACGGTCTAAGATCTATCAACAGCAAAATGGGACATTTCAACTT 564 ||||||||||||||||||||||||||| || ||||| ||||||||||| ||||||||||| Sbjct 480 TAAATCATCGAAGATCAACGGTCTAAGGTCCATCAATAGCAAAATGGGGCATTTCAACTT 539 Query 565 ATTCTCGGTCGAGGATTTTAACATTACAGGCGTTACCATCACTGCTCCTGGAGATAGCCC 624 |||||| || ||||||||||||||||| || ||||||||||||||||| ||||||||||| Sbjct 540 ATTCTCCGTTGAGGATTTTAACATTACCGGAGTTACCATCACTGCTCCCGGAGATAGCCC 599 Query 625 TAATACCGACGGAATCAAGATCGGGAAATCTAGCCATATG-AATATCTTCAACGTCACTA 683 |||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||| Sbjct 600 TAATACCGACGGAATCAAGATCGGGAAATCTAGCCATATGCAA-ATCTACAACGTCACTA 658 Query 684 TCGGAACCGGTGACGATTGTATCGCAATCCTTGACGGAACCAGCAATTTGGATATCTCTG 743 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 TCGGAACCGGTGACGATTGTATCGCAATCCTTGACGGAACCAGCAATTTGGATATCTCTG 718 Query 744 ATGTCAGGTGCGGACCAGGGCATGGGATTAGTGTCGGGAGCCTTGGGAGATATAAAGAGG 803 ||||||| ||||||||||||||||| |||||||||||||| || |||||||||||||||| Sbjct 719 ATGTCAGATGCGGACCAGGGCATGGTATTAGTGTCGGGAGTCTCGGGAGATATAAAGAGG 778 Query 804 AGAAGAACGTCCAGGGCTTAACAGTCAGAAACTCGATTATCAACGGTACAACTGACGGTT 863 |||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||| Sbjct 779 AGAAGAACGTCCAGGGCTTAACCGTCAGAAACTCGATTATCAACGGTACCACAGACGGTT 838 Query 864 TACGTATCAAGACATGGGCTAAGTCGGTATCGCAGATTTCGGTTTCGAATTTCCTCTACG 923 ||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||| Sbjct 839 TACGTATCAAGACATGGGCTAAGTCCGTATCGCAGATTTCGGTTTCGAATTTCTTGTACG 898 Query 924 AGAACATCCAAATGATCAATGTTGGAAACCCTATCGTCATTGATCAGCAGTATTGTCCAC 983 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 AGAACATCCAAATGATCAATGTTGGAAACCCTATCGTCATTGATCAGCAGTATTGTCCAC 958 Query 984 ACGGACAATGTGATAGTCCTGGAAAGTATGCTTCTCATGTTCAGATAAAAGACGTCAAGT 1043 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 ACGGGCAATGTGATAGTCCTGGAAAGTATGCTTCTCATGTTCAGATAAAAGACGTCAAGT 1018 Query 1044 ATAACAAAATTTGGGGAACTTCGACAAGCAAAGAGGCTTTGAAGATGCAATGTAGTAAAG 1103 ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1019 ATAACAATATTTGGGGAACTTCCACAAGCAAAGAGGCTTTGAAGATGCAATGTAGTAAAA 1078 Query 1104 CGTTTCCTTGTCAAGACGTCGAGCTCTCAAATATCAACTTGAAATACGTTGGACGTGACG 1163 ||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||| Sbjct 1079 CGTTTCCTTGTCAAGACGTTGAGCTCTCAAATATCAACTTGCACTACGTTGGACGTGACG 1138 Query 1164 GTTTAGTCACGGCTTTGTGTGAGAACGTTGGTGGATCGATTCGTGGCAAGATTGTTCCTG 1223 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1139 GTTTAGTCACGGCTTTGTGTGAGAACGTTGGTGGTTCGATTCGTGGCAAGATTGTTCCTG 1198 Query 1224 CAAATTGCCGGAT 1236 |||||||| |||| Sbjct 1199 CAAATTGCAGGAT 1211 > AT2G40310.1 | Symbols: | Pectin lyase-like superfamily protein | chr2:16834065-16835711 FORWARD LENGTH=1215 Length=1215 Score = 248 bits (134), Expect = 9e-65 Identities = 551/742 (74%), Gaps = 70/742 (9%) Strand=Plus/Plus Query 275 GGTCCTTGCAAAAACCCTATT-ACTTTTATTATCAGA-GGAACTTTATTGGCTCCTCG-T 331 ||||| |||||||| |||||| | || | || || |||||||||||||||||| | Sbjct 247 GGTCCATGCAAAAATCCTATTGA-ATTCGTCAT-TGATGGAACTTTATTGGCTCCT-GCA 303 Query 332 AATCCTTA-CGCTATCAAACAAGATGA-ATGGAT--ACTTTTCAAGTACGTCGATAATCT 387 ||||| || | ||| || |||||| | |||||| || ||| | |||| || | ||||| Sbjct 304 AATCC-TAGTGATATTAAGCAAGAT-ACATGGATCAAC-TTT-AGGTACATCAACAATCT 359 Query 388 CACGGTTA-CTGGCGG-T--GGAT-TACTTGACGGCCAAGGATCTTATTCTTGGCCTCTC 442 | || || ||| | || | |||||||||||||||| | |||||||| ||| Sbjct 360 TTC---TATCT-CCGGTTCCGG-TACACTTGACGGCCAAGGAAAACAATCTTGGCCACTC 414 Query 443 AATGATTGTAACAAGAACA-C-CAATTGTCGTACACTAGCTATGAACAT-TGGG-TTTGC 498 ||||| || |||| || | | |||||||| || |||||||||| || | |||| ||||| Sbjct 415 AATGACTGCCACAA-AA-ATCTCAATTGTCCTAAACTAGCTATG-AC-TATGGGATTTGC 470 Query 499 TTTTGTTAA-ATCATCGAAGATCAACGGTC-TAAGATCTA-TCAACAGCAAAATGGGACA 555 || || || | | || || ||||| | | ||| ||| | ||||||||||||||||||| Sbjct 471 ATTCGTGAACAAC-TCAAATATCAA-AGACATAACATC-ACTCAACAGCAAAATGGGACA 527 Query 556 TTTCAACTTATTCTCGGTCGAGGATTTTAACATTACAGGCGTTACCATCACTGCT-CCTG 614 ||||||||| ||||| ||| | | ||||| ||||| ||||| || || || ||| || | Sbjct 528 TTTCAACTTCTTCTCCGTCCATCACTTTAATATTACCGGCGTCACTATAACAGCTTCC-G 586 Query 615 GAGATAGCCCTAATACCGACGGAATCAAGATCGGGAA-ATCTAGCCATATGAATATCTTC 673 | ||||| ||||| |||||||| |||||||| ||| || |||| | ||| | |||| | Sbjct 587 GTGATAGTCCTAACACCGACGGTATCAAGAT-GGGTTCATGTAGCAACATGCACATCTCC 645 Query 674 AACGTCA--CTATCGGAACCGGTGACGATTGTATCGCAATCCT-TGACGGAACCAGC-AA 729 ||| || | ||||| ||||| ||||||||||| || || || | ||||||| | || Sbjct 646 AACA-CAAAC-ATCGGTACCGGAGACGATTGTATTGCCATTCTCTCT-GGAACCA-CTAA 701 Query 730 TTTGGATATCTCTGATGTCAGGTGCGGACCAGGGCATGGGATTAGTGTCGGGAGCCTT-G 788 | ||||||||| |||| | || || || || |||||||| ||||| || || || | Sbjct 702 CCTCGATATCTCTAATGTTAAATGTGGTCCCGGACATGGGATCAGTGTTGGAAGT-TTAG 760 Query 789 GGA-GATATAAAGAGGAGAA-GAACGTCCAGGGCTTAACAGTCAGAAAC-TCGATTATCA 845 ||| || | ||||| ||||| || ||| | ||||||||| ||| || || ||| ||| Sbjct 761 GGAAGA-ACAAAGACGAGAAAGA-CGTGAAAAACTTAACAGTAAGAGACGTC-ATTTTCA 817 Query 846 ACGGTACAACTGACGGT-TTACGTATCAAGACATGGGCTAAG-T-CGG-TATCGCAGATT 901 ||||||||| ||| ||| || || |||||||| |||| || | | | | || | || Sbjct 818 ACGGTACAAGTGATGGTATT-CGGATCAAGACTTGGG--AATCTTCAGCT-TCAAAAATC 873 Query 902 -TCGGTTTCGAA-TTTCCTCTACGAGAACATCCAAATGATCAATGTTGGAAACCCTATCG 959 ||| ||||||| ||| | |||||||| || || ||||| | |||||||| || ||| Sbjct 874 CTCG-TTTCGAACTTTG-TGTACGAGAATATTCAGATGATTGACGTTGGAAAACCAATCA 931 Query 960 TCATTGATCAGCAGTATTGTCC 981 ||| |||||| |||||||||| Sbjct 932 ACATCGATCAGAAGTATTGTCC 953 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61947472530 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5