BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933899

Length=842
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G33190.1 | Symbols:  | F-box family protein with a domain of...  67.6    2e-10


> AT2G33190.1 | Symbols:  | F-box family protein with a domain 
of unknown function (DUF295) | chr2:14067972-14069111 FORWARD 
LENGTH=1140
Length=1140

 Score = 67.6 bits (36),  Expect = 2e-10
 Identities = 38/39 (97%), Gaps = 0/39 (0%)
 Strand=Plus/Plus

Query  696   TGCGGTGTATTCGATCTTGCGACAAGTACAATCACATGG  734
             |||||||| ||||||||||||||||||||||||||||||
Sbjct  1042  TGCGGTGTGTTCGATCTTGCGACAAGTACAATCACATGG  1080



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41041298099


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5