BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933906
Length=307
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33233.1 | Symbols: LCR49 | low-molecular-weight cysteine-ri... 274 3e-73
AT3G48231.1 | Symbols: LCR48 | low-molecular-weight cysteine-ri... 265 2e-70
> AT2G33233.1 | Symbols: LCR49 | low-molecular-weight cysteine-rich
49 | chr2:14083030-14083614 REVERSE LENGTH=393
Length=393
Score = 274 bits (148), Expect = 3e-73
Identities = 170/180 (94%), Gaps = 4/180 (2%)
Strand=Plus/Plus
Query 127 CAGAGATCAAAGCAACGATAAATGGCCTCGAATGCTTTAATACATGTACGCCTTCA-TAT 185
||||||||||||||| ||| ||||| || ||||||||||||||||||||||||| | |||
Sbjct 119 CAGAGATCAAAGCAAAGATCAATGGACTAGAATGCTTTAATACATGTACGCCTT-ATTAT 177
Query 186 GATGATTATAAATGCAATCTGGACTGCCTATCATCGGGGTACCCGGCAGGAGATTGTCAT 245
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 178 GATGATTATAAATGCAATGTGGACTGCCTATCATCGGGCTACCCGGCAGGAGATTGTCAT 237
Query 246 ACT-GTGTCTCCTTCTCAACCTAAAAAATGTTGTTGTTATTAATTAAAATTGATGATCCG 304
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 A-TCGTGTCTCCTTCTCAACCTAAAAAATGTTGTTGTTATTAATTAAAATTGATGATCCG 296
> AT3G48231.1 | Symbols: LCR48 | low-molecular-weight cysteine-rich
48 | chr3:17858259-17858874 REVERSE LENGTH=414
Length=414
Score = 265 bits (143), Expect = 2e-70
Identities = 168/180 (93%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 127 CAGAGATCAAAGCAACGATAAATGGCCTCGAATGCTTTAATACATGTACGCCTTCA-TAT 185
||||||||||||||| ||| |||||||| |||||||||||||||||||| ||| | |||
Sbjct 134 CAGAGATCAAAGCAAAGATCAATGGCCTAGAATGCTTTAATACATGTACATCTT-ATTAT 192
Query 186 GATGATTATAAATGCAATCTGGACTGCCTATCATCGGGGTACCCGGCAGGAGATTGTCAT 245
|||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||| ||
Sbjct 193 GATGATCATAAATGCAATGTGGACTGCCTATCATCGGGGTACCCGGCAGGAGAATGTTAT 252
Query 246 ACTGTGTCTCCTTCTCAACCTAAAAAATGTTGTTGTTATTAATTAAAATTGATGATCCGT 305
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 253 ACTGTGTCTCCTTCTCAACCTAAAAAATGTTGTTGTTATTAATTAAAACTGATGATCCGT 312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14225772967
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5