BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933914
Length=2005
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33290.1 | Symbols: SUVH2, SDG3, ATSUVH2 | SU(VAR)3-9 homolo... 2953 0.0
> AT2G33290.1 | Symbols: SUVH2, SDG3, ATSUVH2 | SU(VAR)3-9 homolog
2 | chr2:14109964-14112387 FORWARD LENGTH=2340
Length=2340
Score = 2953 bits (1599), Expect = 0.0
Identities = 1877/2010 (93%), Gaps = 23/2010 (1%)
Strand=Plus/Plus
Query 3 TTCGGTTCATTGGGAAGGATGAGTACAGTGGTACCATTTCCTGACCTCAACCTAATGCCG 62
||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||
Sbjct 97 TTCGGTTCATTGGGAAGGATGAGTACATTGTTACCATTTCCTGACCTCAACCTCATGCCG 156
Query 63 GCTTCTCAATCCTCCACCGCCGGAACAACAGCCGGAGACACTGTAGTCACCGGAAAGCTA 122
| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||
Sbjct 157 GATTCTCAATCCTCCACCGCCGGAACCACAGCCGGCGACACTGTAGTCACCGGAAAGTTA 216
Query 123 GAAGTTAAGGCCGAGCCAGTTGAAGAATGTCAAACTCCGCCTTCGTCAT-TCTCCGATCA 181
||||| || | || ||| |||| ||||| |||||||| || ||||| | |||||||||
Sbjct 217 GAAGTGAAATCGGAACCAATTGAGGAATGGCAAACTCCACCATCGTC-TACCTCCGATCA 275
Query 182 ATCAGCCAGTACCGATCTCATCGCCGAGTTTATTCGTATCTCCA-AGCTCTTCCGTTCGG 240
|||||||| |||||||||||||||||||||||||||||||| || |||||||||| ||||
Sbjct 276 ATCAGCCAATACCGATCTCATCGCCGAGTTTATTCGTATCT-CAGAGCTCTTCCGCTCGG 334
Query 241 CATTCAAGCCGCAT-CAGATTGAAGGATTAGACGGCGTTTCTGTTTACGGTTTGGATTCC 299
|||||||||| | | ||| | ||||||||||||| || || || ||||| ||||||||
Sbjct 335 CATTCAAGCCAC-TGCAGGTCAAAGGATTAGACGGAGTCTCCGTATACGGATTGGATTCT 393
Query 300 GGTGCGATTGTCACTGTACCGGAGGAAGAGAACCGGGAATTGATTAAACCGCCTCCCGGG 359
||||| || || ||||||||||| |||| ||||||||||||||| |||||||||| ||
Sbjct 394 GGTGCCATCGTTGCTGTACCGGAGAAAGAAAACCGGGAATTGATTGAACCGCCTCCAGGA 453
Query 360 TTTGGGGATAATCGAGTATCAACCGTCGTTGTCTCGCCTCCTCCGACGAAATTCGAGAGA 419
||| |||||||||||| || ||||||||||||||| | ||||||||||||||
Sbjct 454 TTTAAGGATAATCGAGTCTCCACCGTCGTTGTCTCG-------C--CGAAATTCGAGAGA 504
Query 420 CCGAGAGAGCTGGCGAGAATTGCAATTCTAGGTCATGATCAACGGAAGGAACTCCGACAA 479
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 505 CCGAGAGAGCTAGCGAGAATTGCAATTCTAGGTCATGAACAACGGAAGGAACTCCGACAA 564
Query 480 GTCATGAAACGAACTCGGATGACTTATGAGTCTCTTCGGATTCAACTAATGGCGAAGAGT 539
||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 565 GTCATGAAACGAACTAGGATGACTTATGAGTCTCTTCGGATTCATCTAATGGCGGAGAGT 624
Query 540 ATGAAGAACCATGTACTTGGTCAAGGGCGTAGACGGAGGAGCGATATGGCGGCTGCGTAT 599
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 ATGAAGAATCATGTACTTGGTCAAGGGCGTAGACGGAGGAGCGATATGGCGGCTGCGTAT 684
Query 600 ATAATGAGGGATCGGGGACTGTGGTTGAATTACGATAAGCATATAGTTGGTCCAATCTCC 659
||||||||||||||||||||||||||||| || |||||||| |||||||||||| || |
Sbjct 685 ATAATGAGGGATCGGGGACTGTGGTTGAACTATGATAAGCACATAGTTGGTCCAGTCACA 744
Query 660 GGGGTAGAGATT-GGTGATATTTTCTTCTACCGAATGGAATTGTGTGTGGTGGGCTTACA 718
||||| || | | || ||||| ||||||||||| ||||||||||||||| ||||||||||
Sbjct 745 GGGGTTGA-AGTAGGGGATATATTCTTCTACCGTATGGAATTGTGTGTGCTGGGCTTACA 803
Query 719 CGGCCAGACACAAGCCGGGATTGACTGTTTAACGGCTGAACGGAGTGCCACTGGAGAGCC 778
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 804 CGGCCAGACACAAGCCGGGATTGATTGTTTAACGGCTGAACGGAGCGCCACTGGAGAGCC 863
Query 779 TATAGCTACCAGCATTGTTGTCTCAGGTGGTTACGAGGATGATGAAGATACAGGAGATGT 838
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 864 TATAGCTACCAGCATTGTTGTCTCAGGTGGTTATGAGGATGATGAAGATACAGGAGATGT 923
Query 839 TCTGGTTTATACTGGTCACGGTGGTCAGGATAAGCAACACAAGCAGTGTGATAACCAGAG 898
| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 924 TTTGGTTTATACTGGTCACGGTGGTCAGGATCATCAACACAAGCAGTGTGATAACCAGAG 983
Query 899 GCTAGTAGGTGGGAATCTGGGAATGGAGAGGAGTATGCACTACGGTATCGAGGTACGTGT 958
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 984 GCTAGTAGGTGGGAATCTGGGAATGGAGAGAAGTATGCACTACGGTATCGAGGTACGTGT 1043
Query 959 GATTAGAGGTATTAAGTATGAGAACAGTATAAGCTCCAAGGTGTATGTATATGATGGTTT 1018
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1044 GATTAGAGGTATTAAGTATGAGAACAGTATAAGCTCGAAGGTGTATGTATATGATGGTTT 1103
Query 1019 GTATAAGATAGTAGATTGCTGGTTTGCTGTGGGGAAGTCTGGTTTTGGGGTGTTTAAATT 1078
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1104 GTATAAGATAGTAGATTGGTGGTTTGCTGTGGGGAAGTCTGGTTTTGGGGTTTTTAAATT 1163
Query 1079 TAGGTTAGTTAGAATGGAAGGGCAACCGATGATGGGCAGTGCGGTAATGAGGTTTGCACA 1138
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 TAGGTTAGTAAGAATTGAAGGGCAACCGATGATGGGCAGTGCGGTAATGAGGTTTGCACA 1223
Query 1139 AACTCTTAGAAGTAAGCCGTTGATGGTTAGGCCTACTGGTTATGTTAGCTTTGACCTTTC 1198
||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1224 AACTCTTAGAAATAAGCCATCGATGGTTAGGCCTACTGGTTATGTTAGCTTTGACCTTTC 1283
Query 1199 TAACAAGAAGGAGAATGT-CCCTGTGTTTCTATATAATGACGTAGATGGTGATCAAGAAC 1257
|||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1284 TAACAAGAAGGAGAATGTACCC-GTGTTTCTATATAATGATGTAGATGGTGATCAAGAAC 1342
Query 1258 CGAGACACTATGAGTACATTGCAAAATCTGTCTTTCCTCCTGGAATTTTTGGTCAAGGGG 1317
||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1343 CGAGACATTATGAGTACATTGCAAAAGCTGTCTTTCCTCCTGGAATTTTTGGTCAGGGGG 1402
Query 1318 GGATCAGCAGGACTGGCTGCGATTGTAAGCTCTCCTGTACTGATGATTGTCTCTGTGCAA 1377
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1403 GGATCAGCAGGACTGGCTGCGAGTGTAAGCTCTCTTGTACTGATGATTGTCTCTGTGCAA 1462
Query 1378 GGAAGAACGGTGGTGAGTTTGCATATGATGATAATGGGCATCTATT-AAGAGGAAAGGAT 1436
|||||||||||||||||||||||||||||||||| ||||||||||| || ||||||| ||
Sbjct 1463 GGAAGAACGGTGGTGAGTTTGCATATGATGATAACGGGCATCTATTGAA-AGGAAAGCAT 1521
Query 1437 GTGGTATTTGAATGTGGGGAATTCTGCACGTGTGGTCCGAGCTGTAAGAGCCGTGTGACA 1496
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1522 GTGGTATTTGAATGTGGGGAATTCTGCACTTGTGGTCCGAGCTGTAAGAGCCGTGTGACA 1581
Query 1497 CAGAAGGGATTGAGGAATAGGCTGGAGGTTTTCAGATCGAAGGAAACCGGTTGGGGTGTC 1556
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1582 CAGAAGGGATTGAGGAACAGGCTAGAGGTTTTCAGATCGAAGGAAACCGGTTGGGGTGTC 1641
Query 1557 AGGACACTCGATCTAATTGAAGCTGGTGCTTTCATATGCGAATATGCAGGTGTTGTTGTC 1616
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1642 AGGACACTTGATCTAATTGAAGCTGGTGCTTTCATATGCGAATATGCAGGTGTAGTTGTC 1701
Query 1617 ACAAGACATCAAGCCGAGATTCTGTCAATGAATGGGGATGTTATGGTCTATCCTGGTCGG 1676
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1702 ACGAGACTTCAAGCCGAGATTCTGTCAATGAATGGGGATGTTATGGTCTATCCTGGTCGG 1761
Query 1677 TTCACAGACAAATGGCGTAACTGGGGTGATTTATCTCAAGTATACCCAGATTCTGTTAGG 1736
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1762 TTCACAGACCAATGGCGTAACTGGGGTGATTTATCTCAAGTATACCCAGATTTTGTTAGG 1821
Query 1737 CCGGATTATCCATCTCTCCCTCCCCTGGATTTCGCAATGGATGTGTCAAGGATGAGGAAC 1796
||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1822 CCGAATTATCCATCTCTCCCTCCACTGGATTTCTCAATGGATGTGTCAAGGATGAGGAAC 1881
Query 1797 GTGGCTTGCTACATTAGTCACAGCAAAGATCCGAATGTGATGGTGCAGTTTGTTTTATAC 1856
||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |
Sbjct 1882 GTGGCTTGCTACATTAGTCACAGCAAAGAACCAAATGTGATGGTGCAATTTGTTTTGCAT 1941
Query 1857 GACCACAACCACCTGATGTTCCCCCGCGTGATGCTTTTTGCGCTGGAGAACATATCACCG 1916
|||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 1942 GACCACAATCACCTGATGTTCCCCCGTGTGATGCTTTTTGCGCTGGAGAATATCTCACCG 2001
Query 1917 TTGGCCGAGCTAAGCCTGGACTATGGCTTGGCAGATGAAGTGAACAGG-AAGCTCGCCAT 1975
|||||||||||||||||||| || ||||||||||||||||||||| || |||||||||||
Sbjct 2002 TTGGCCGAGCTAAGCCTGGATTACGGCTTGGCAGATGAAGTGAAC-GGCAAGCTCGCCAT 2060
Query 1976 CTGCAACTAGTTTTGACAAAGTTTGATTTT 2005
|||||||||||||| |||||||||| ||||
Sbjct 2061 CTGCAACTAGTTTTTACAAAGTTTGTTTTT 2090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99346878555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5