BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933917
Length=1829
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33320.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 2700 0.0
> AT2G33320.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr2:14119526-14122094 REVERSE LENGTH=2569
Length=2569
Score = 2700 bits (1462), Expect = 0.0
Identities = 1711/1829 (94%), Gaps = 25/1829 (1%)
Strand=Plus/Plus
Query 3 TGATTGTGTTCACAAACAATGTCGATGTTTCCTTCTTTCCAGTTGCTAGAGCTCAACATA 62
||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 743 TGATTGTGTACACAAACAATGTCGATATTTCCTTCTTTCCAATTGCTAGAGCTCAACATA 802
Query 63 ATCTCTGCTCAAGATCTAGCTCCTGTCTCACGTAAAATGAAGACCTACGCGGTGGCTTGG 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 ATCTCTGCTCAAGATCTAGCTCCTGTCTCACGTAAAATGAAGACCTACGCGGTGGCTTGG 862
Query 123 GTTCACTCTGAACGTAAACTCACCACTCGCGTAGATTACACCGGTGGTGCAAACCCAACA 182
|||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 863 GTTCACTCTGAACGCAAACTCACCACCCGCGTAGATTACACCGGTGGTGGAAACCCAACT 922
Query 183 TGGAACGACAAGTTCGTTTTCCGAGTTAGCGAGGATTTCCTCTACGCCGATACTTCAGCC 242
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 TGGAACGACAAGTTTGTCTTCCGAGTTAGCGAGGATTTCCTCTACGCCGATACTTCAGCC 982
Query 243 GTCGTGGTTGAAATCTACGCCTTACATTGGTTCCGTGATGTTCACGTTGGCACAATCCGT 302
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 983 GTCGTGGTTGAAATCTACGCTTTACATTGGTTCCGTGATGTTCACGTTGGCACAGTCCGT 1042
Query 303 GTTCTCATCAGCAACCTAATCCCTCCAAATCGTCGACCTGGATACCGAAGCAATGATGAA 362
|| ||||| |||||| |||||||||||||||| |||||||||||||||||||| || ||
Sbjct 1043 GTCCTCATTAGCAACTTAATCCCTCCAAATCGCCGACCTGGATACCGAAGCAACGAGGAG 1102
Query 363 TATCGTCGTACACCACCTCCAGGAATGAGATTCGTCGCGCTTCAAGTTCGCCGACCATCA 422
|| ||||||||||| ||||| |||||| |||||||||| |||||||||||| ||||||||
Sbjct 1103 TACCGTCGTACACCCCCTCCCGGAATGCGATTCGTCGCACTTCAAGTTCGCAGACCATCA 1162
Query 423 GGTCGTCCTCAAGGAATATTAAACATCGGTGTGGGGATACTTGATGGATCAATGCGTAGT 482
||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 1163 GGTCGTCCTCAAGGAATATTAAACATCGGTGTGGGAATACTGGACGGATCAATGCGTAGC 1222
Query 483 ATGCCACTTTACACGAATATGGACTCATCTGCAGTTGGTTACAGAGACTTGCTTGGAGAA 542
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1223 ATGCCACTTTACACCAATATGGACTCTTCTGCAGTAGGTTACAGAGACTTGCTTGGAGAA 1282
Query 543 GAAGATCCAAATTTGCAGAATTTGCATCTTAATAGCTTCAAAGGAAGCTCAAAGAATCCA 602
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1283 GAAGATCCAAATCTGCAGAATTTGCATCTCAATAGCTTCAAAGGAAGCTCAAAGAATCCA 1342
Query 603 CAATCACCATCTTCTAAACAATACCAATCCGTAGTCTCGAGACCGCCGGTGCTCCGTCGT 662
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1343 CAATCACCATCTTCTAAACAATACCAATCCGTAGTCTCGAGACCGCCAATGCTCCGTCGT 1402
Query 663 ACAAGGAGCGATACAAGTTCAATGGTCGTTTCTGATCTTCTAAGCAGAGCTGAGCGAAGC 722
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1403 ACAAGGAGCGATACAAGTTCAATGGTCGTTTCCGATCTTCTAAGCAGAGTTGAGCGAAGT 1462
Query 723 CGTGTGGCTAACAGAAAGCCAGCGAGCGCGTTGATGAGCACCGAATCGGAAACTGTACCT 782
||||| ||||| || |||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1463 CGTGTAGCTAATAGGAAGCCAGCGAGCGCGTTGATGAGCGCAGAATCGGAAACTGTACCT 1522
Query 783 ACAACGTCGGGACACGATTC-GATGACGTCAGATTCCGAGCTGACGAAATCGATCGATTA 841
|||||| ||||||||||||| | |||| |||||||||||||||||||||||||| || ||
Sbjct 1523 ACAACGACGGGACACGATTCAG-TGACTTCAGATTCCGAGCTGACGAAATCGATAGAGTA 1581
Query 842 TGGACTTCCTTACCAATCCCCAAAGATTCCAAGTCAGAGATACGATTCTTACGAGCCTGA 901
|| ||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1582 TGCACTTCCTTATCAATCCCCAAAGATTCCAAGTCAGGGATACGATTCATACGAGCCTGA 1641
Query 902 TTACGTAGATCGATCACCAAACCACAATGTGTTGCG----A-----------CA-C--GA 943
|| | |||||| ||||||||| |||||||||||||| | || | ||
Sbjct 1642 TTTCATAGATCAATCACCAAATCACAATGTGTTGCGGCCGAGAAGTGAGAGACAACACGA 1701
Query 944 ACCTGATTTCATAGATCAGTCGCCTTATCGATCTTACGATCGTTCACGCAAAACTCCGAG 1003
|||||||||||||||||| || |||| |||||| |||||||||||||||||||||||||
Sbjct 1702 ACCTGATTTCATAGATCAATCACCTTTTCGATCAAACGATCGTTCACGCAAAACTCCGAG 1761
Query 1004 AAGATCAACACCGATGATCGAGAAACCAAGACCGCCGAGAGATTATGACCGTAGCA-GTA 1062
|||||||||||| ||||||||||||||||||||||||||||| |||||||||| || | |
Sbjct 1762 AAGATCAACACCAATGATCGAGAAACCAAGACCGCCGAGAGACTATGACCGTA-CAAGCA 1820
Query 1063 GCCGCGCTTCACCGTATTTGTCAAGACACGGAACGCCGTTGAGATCAAACATCGTCGCGT 1122
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1821 GCCGCGCTTCACCATATTTGTCAAGACACGGAACGCCGTTGAGATCAAACATCGTCGCGT 1880
Query 1123 CTACTCCGATCAGATCTAACATGGTTGCATCAAGTCCGATGAGATCCACCGGCGTTGGAT 1182
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct 1881 CTACTCCGATCAGATCTAACATGGTTTCATCAAGTCCAATGAGATCCACCGGCGTCGGAT 1940
Query 1183 CAACTCCGAGAAGATCTAACCTCCTCGGTTCGACTCCGTTACGTTCCAACATCGTTGGAT 1242
|||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| ||||
Sbjct 1941 CAACTCCGAGAAGATCTAACATCCTCGGATCGACTCCGTTACGATCCAACATCGTCGGAT 2000
Query 1243 CAACTCCGATTCGATCTAACTACATGGCTACACCGATGAAATCGCCTTTACAATTCGGTA 1302
||||||||||| |||||||||||| |||||||||||||||||||||| | ||||| ||||
Sbjct 2001 CAACTCCGATTAGATCTAACTACAAGGCTACACCGATGAAATCGCCTATGCAATTTGGTA 2060
Query 1303 CTCCGATGAGATCTAATTTAGCAGGACGACCGATTTTAACCGAATCCGAATTAGGTCCGT 1362
|||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 2061 CTCCGATGAGATCTAATTTAGCAGGAAGACCGGTTTTAACAGAATCCGAATTAGGTCCGT 2120
Query 1363 CGCCATCGGAAGTAGCACAGAAAATGGCGAAAGAGAGATCACAAGCTAACGAAACAGAGA 1422
||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2121 CGCCATCAGAAGTAGCGCAGAAAATGGCGAAAGAGAGATCACAAGCTTACGAAACAGAGA 2180
Query 1423 GTTCGATTCTTAGTGAATGGAGCTTAGACGATGACAGTAACATCGAAGGTCTCCGATCGA 1482
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2181 GTTCGATTCTTAGTGAATGGAGCTTAGACGATGATAGTAACATCGAAGGTCTCCGATCGA 2240
Query 1483 AACTCGAGCGATGGCGAACGGAGCTTCCGCCGCTTTACGATCTGGGATCGAGCCATCAAA 1542
|||| ||| ||||| |||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 2241 AACTTGAGAGATGGAGAACAGAGCTTCCGCCGCTTTACGATCTGGGATCGAGTCATCAAA 2300
Query 1543 GCAGCGATGTAGGAAGCGGCGCGATTGTTGTTGCTAATGTAGGTGGAGGAAAAAGCTCGA 1602
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2301 GCAGCGATGTAGGAAGCGGCGCGATGGTTGTTGCTAATGTAGGTGGAGGAAAAAGCTCGA 2360
Query 1603 GGAAGAAAACTCCGGTGGTGAAGAAGAAGCATAATCGCCGTCACACTGAAGGAGG---TA 1659
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2361 GGAAGAAAACTCCGGCGGTGAAGAAGAAGCATAATCGCCGTCACACTGAAGGAGGAGGTA 2420
Query 1660 ACGGACTTTTCTCGTGTTTTAGTAATTTGTGCGGCGTTGAATGCACATTCGTGTGTGGAG 1719
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2421 ACGGACTTTTCTCGTGTTTTAGTAATTTGTGCGGCGTGGAATGCACATTCGTGTGTGGAG 2480
Query 1720 GCGGGTCGGATCAAGACGGGTCAAAAAAGAAAGGTGGCTCTGGGCGTTTGCCCCGCTTGG 1779
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2481 GCGGGTCGGATCAAGACGGGTCAAAAAAGAAAGGTGGGTCTGGGCGTTTGCCCCGCTTGG 2540
Query 1780 GTTCTGCTGATGATTTGAGTTATTTATGA 1808
| |||||||||||||||||||||||||||
Sbjct 2541 GCTCTGCTGATGATTTGAGTTATTTATGA 2569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90511582635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5