BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933921
Length=1848
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33360.1 | Symbols: | Protein of unknown function (DUF3527)... 2937 0.0
> AT2G33360.1 | Symbols: | Protein of unknown function (DUF3527)
| chr2:14139798-14143118 FORWARD LENGTH=2571
Length=2571
Score = 2937 bits (1590), Expect = 0.0
Identities = 1772/1859 (95%), Gaps = 16/1859 (1%)
Strand=Plus/Plus
Query 1 TTTGGGTATAGCGAGCGGAACAATGGGGAGTGTTTCTCCTGATGCTCAGAAGGATGATCC 60
|||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 490 TTTGAGTATAGCGAGCGGAACGATGGGAAGTGTTTCTCCTGATGCTCAGAAGGATGATCT 549
Query 61 TGAGCTTGAAGATTCATTGAACATTGATGAGAATCTGTCTGGGGAAAATGGCTTATTGAA 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 550 TGAGCTTGAAGATTCATTGAACATTGATGAGAATCTGTCTGGGGGAAATGGCTTATTGAA 609
Query 121 GTCAGTGAACTTGTTGAGCCAGAAAAGACAGCAATGTAGTTTAGTTTCAAACAGCGGAGA 180
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 610 GTCAGGGAACTTGTTGAGCCAGAAAAGACAGCAATGTAGTTTAGTTTCAAACAGCGGAAA 669
Query 181 GTGGTTACAGATTGTTAAAGACGGTCCCAAGGGGTCGTTTTCTCGTGCCACTAGTTTCTT 240
||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||
Sbjct 670 GTGGTTACAGATTGTTAAAAACGGTCCCAAGGGATCTTTTTCTCGTGCCACTAGTTTCTT 729
Query 241 CGATAACAAGATCCCAAGGCAGTTGGTATCAATAGACGAGAAGTATCTCCGTCGATGCCT 300
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 730 CGATAACAAGATCCCAAGGCAGTTGGTGTCAGTAGACGAGAAGTATCTCCGTCGATGCCT 789
Query 301 CGACCTGATTAATATCAGTGCGTTTAAGTCAGCCAGTTGTAGCCTTTCTTTGAATCTTGT 360
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 790 TGACCTGATTAATATCAGTGCGTTTAAGTCAGCCAGTTGCAGCCTTTCTTTGAATCTTGT 849
Query 361 AGGATCAAAGATGAGTTTGTCTTCACGTCACTTCGATTCACCTGTTATCCCCAAAGAAAA 420
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 850 AGGATCAAAGATGAGTTTGTCTTCACGTCGCTTCGATTTACCTGTTATCCCCAAAGAAAA 909
Query 421 TGTTGCTCGCCTTGTGTTTGATCTTCCGTTGGTAGATGATTCTGGCAGTCCAGTGATCAG 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 910 TGTTGCTCGCCTTGTGTTTGATCTTCCGTTGGTAGATGATTCAGGCAGTCCAGTGATTAG 969
Query 481 CCGTGCAATTATAGGTTGCAAGAGGGTTACATATATGCTTGATAAGCCTTTGTTACACGA 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 970 CCGTGCAATTATAGGTTGCAAGAGGGTTACATATATGCTTGATAAGCCTACGTTACAC-A 1028
Query 541 -TCTCGAAGGATTGGATGGGGATGGT-ATGAATAGT-GGGACAAGGCGAGACCATAATGG 597
|||||||| ||| ||||| |||||| || |||| | |||||||||||||||||||||||
Sbjct 1029 GTCTCGAAGCATTAGATGGTGATGGTAAT-AATA-TCGGGACAAGGCGAGACCATAATGG 1086
Query 598 TGAAAACGAGTTGGTTTCATGTGATGTTGTCAGAAAGATAGAGGAAAAAGACACCCCGGA 657
||||| |||||||||||||| ||||||||| || ||||||||||||||| ||||||||||
Sbjct 1087 TGAAAGCGAGTTGGTTTCATATGATGTTGTGAGGAAGATAGAGGAAAAAAACACCCCGGA 1146
Query 658 TTTGCAGTTTCAGAGTTATCAATCTGGAAACATGCCCCAAAAGGCAGTCTCTTTGTCAAG 717
|| ||||||| ||||||||| |||||||||||||||| ||||||||| ||||| |||||
Sbjct 1147 TTCACAGTTTCTGAGTTATCATTCTGGAAACATGCCCCGAAAGGCAGTTTCTTTATCAAG 1206
Query 718 CACAAATTCAATGAGTTCTTCCTCTTCTGAGCAATCTTCTTCC-GGTTGGTCTCCGTCTT 776
|||||||||| |||||||||| ||||||||||||||||||||| | |||||||| ||||
Sbjct 1207 CACAAATTCATTGAGTTCTTCTTCTTCTGAGCAATCTTCTTCCTCG-TGGTCTCCATCTT 1265
Query 777 CATCAGTTTCTCAAGGAACACTTCAATTCATTATGAAAGACAACAAGACGCCTCATTTTG 836
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1266 CATCAGTTTCTCAAGGAACACTTCAATTCACTATGAAAGACAACAAGACGCCTCATTTTG 1325
Query 837 TTTTCTCACTGGATGATCAGAAAGAGATCTATGTAGCTAGCTTAAGCACTACTAGTGTTG 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 TTTTCTCACTGGATGATCAGAAAGAGATCTATGTAGCTAGCTTAAGCACTACTAGTGTTG 1385
Query 897 GGTCAGGTTTCGACCGTAGTTCTCTAGACTATTCGTATTTGATCCATTTGAAGAAAGGCC 956
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1386 GGTCAGGTTTCGACCGTAGTTCTCTAGACTATTCGTATTTGATCCATTTGAAGAAAGGTC 1445
Query 957 GCGGAGCTGAGCTGCAGCATTTGGTTGGTAAACTAAAGGTATCAACTTTGTTTTCTGTCT 1016
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 GCGGATCTGAGCCGCAGCATTTGGTTGGTAAACTAAAGGTATCAACTTTGTTTTCTGTCT 1505
Query 1017 CGTCCACGAATGAAAAAACTGTAGAGAGACAGTTTGTTCTATTCAGCAGTGGTGGGAATC 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1506 CGTCCACGAATGAAAAAACTGTAGAGAGACAGTTTGTTCTATTCAGCAGTGGTGGAAATC 1565
Query 1077 CGCAGTTACAATGCCACAACGATATTAGGAAAAACAGAGGATTGCCTAAGAAAGTCGTCG 1136
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1566 CGCAGTTACCGTGCCACAAAGATATTAGGAAAAACAGAGGATTGCCTAAGAAAGTCGTTG 1625
Query 1137 ATGCTCTCAAAAGCACCAAACGCACTTCAAGGCAAAGAAGTATCTCAAGATTCAGCAGAA 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1626 ATGCTCTCAAAAGCACCAAACGCACTTCAAGGCAAAGAAGTATCTCAAGATTCAGTAGAA 1685
Query 1197 CAAGCTCCATACCAGAATTTTGTTCTTGGGAGCCATTTCAAGAACATGAAAACGATCTTG 1256
||||||||||||| || |||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1686 CAAGCTCCATACCGGATTTTTGTTCTTGGGAGCCATTTCAAGAACATGACAGCGATCTTG 1745
Query 1257 AACCCGTAAGTTTACTGGATAACGACCTTCCACCAAATCTTGAAACCTCAGCTGTTGTTG 1316
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1746 AACCCATAAGTTTACTGGATAATGACCTTCCACCAAATCTTGAAACCTCAGCTGTTGTTG 1805
Query 1317 TGAGAGAACAGTTTCCTGTGGAAGAAGAAGAAGAAG------TCGAAAAAGTTGGAGGCT 1370
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1806 TGAGAGAACAGTTTCCAGTGGAAGAAGAAGAAGAAGAAGAAGTCGAAAAAGTTGGAGGCT 1865
Query 1371 GGGGCATGAAGTTTCTCAAGAAAATGCCCTTAGCTCGAACCAAGGATGCTTCTAAAAATT 1430
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1866 GGGGCATGAAGTTTCTCAAGAAAATTCCCTTAGCTCGAACCAAGGATGCTTCTAAATGTT 1925
Query 1431 CTAAGCTTTCGACAAGCATAGATGTTGTGATTCCTTCAGGGATTCACGGAGGGCCGAGAA 1490
|||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1926 CTAAGCATTCCACAAGCATAGATGTTGTGATTCCTTTAGGGATTCACGGAGGGCCGAGAA 1985
Query 1491 ATAGAAACGGTGGTCCTTCGAGCTTGATTCAGAGATGGAAATCCGGCGGATGCTGTGATT 1550
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1986 ATAGAAACGGTGGTCCTTCGAGCTTGATTCAGAGATGGAAATCCGGTGGATGCTGTGATT 2045
Query 1551 GCTCTGGATGGGACTTGGGTTGCCCCTTAACCGTCCTTAAAGGCCAAGCGCGAAAAGACC 1610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2046 GCTCTGGATGGGACTTGGGTTGCCCCTTAACCGTCCTTAAAGGCCAAGCGCGAAAAGACC 2105
Query 1611 AAAATGAAGGCCAATGCAATCTTTTTGAGCTCTTCACAGAGGGAATGATGCAGGGAAGTC 1670
||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 2106 AAAGTGAAGGCCAATGCAATCTTTTTGAGCTTTTCACAGAGGGATTGATGCAGGGAAGTC 2165
Query 1671 CTGGATTAAGGATCATGAATGTTCGAGACGGTCTCTT-TTTCGTCCAATCTCAAGCAAAG 1729
||||| |||||||||||||||||||||| ||||||| ||| ||||| ||||||||||||
Sbjct 2166 CTGGACTAAGGATCATGAATGTTCGAGATGGTCTCTACTTT-GTCCAGTCTCAAGCAAAG 2224
Query 1730 ATATCTGTTTTGCAATCTTTTTCAATTGCTTTAGCATACATTCATAGCCAAAGCCAGAGA 1789
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2225 ATATCAGTTTTGCAATCTTTTTCAATTGCTTTAGCATACATTCATAGCCAAAGCCAGAGA 2284
Query 1790 CTCCGGCCATGGTCGTCAAAGAAGTGTACAGAAGCTTAACTAGCAAAAGAAAGGATTGC 1848
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2285 CTCCGGCCATGGTCGTCAAAGAAGTGTACAGAAGCTTAACTAGCAAAAGAAAGGATTGC 2343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91465392990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5