BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933938

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G33510.2 | Symbols:  | unknown protein; INVOLVED IN: biologi...   575    2e-163


> AT2G33510.2 | Symbols:  | unknown protein; INVOLVED IN: biological_process 
unknown; LOCATED IN: cellular_component unknown; 
BEST Arabidopsis thaliana protein match is: unknown protein 
(TAIR:AT1G28070.1). | chr2:14194150-14195647 FORWARD LENGTH=834
Length=834

 Score =  575 bits (311),  Expect = 2e-163
 Identities = 365/388 (94%), Gaps = 15/388 (4%)
 Strand=Plus/Plus

Query  231  GGAGATATTTACTACATAAACTGGAAAAACGGAATGAGAGTGAAAGAGGATCCAAGGAAA  290
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  304  GGAGAGATTTACTACATAAACTGGAAAAACGGAATGAGAGTGAAAGAGGATCCAAGGAAA  363

Query  291  GTGATGAATGCGGATCCTGACAGTGGAGACTCATATGGAACCGTGTGTTCAGAAGAAGAT  350
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  364  GTGATGAATGCAGATCCTGACAGTGGAGACTCATATGGAACCGTGTGTTCAGAAGAAGAT  423

Query  351  AGCTCATATTACGACAGCGAAGAGTCTTCAGCAGAGTCATCCCCATCATCaagagagaat  410
            |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct  424  AGCTCATATTACGACAGCGAAGAGTCTTCATCAGAGTCATCTCCATCATCAAGAGAGAAT  483

Query  411  cataaaga-g--gaaga-g--gaaga-g-g-a--a-gaagaagaagaTG-T-T-CTAGTG  455
            |||||||| |  ||||| |  ||||| | | |  | ||||||||||| | | | ||||||
Sbjct  484  CATAAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAAGAAGAAGAAGAAGATGTGCTAGTG  543

Query  456  GTTGCTGGATGCAAAGCTTGTTTCATGTACTTCATGGTTCCTAAGCTTGTCGAGGACTGT  515
            |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  544  GTTGCTGGTTGCAAAGCTTGTTTCATGTACTTCATGGTTCCTAAGCTTGTTGAGGACTGT  603

Query  516  CCCAAATGTGCAGCACAGCTTCTTCACTTTGATCGACCTCATTCTGCATCTTCTTGAAAC  575
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  604  CCTAAATGTGCAGCACAGCTTCTTCACTTTGATCGACCTCATTCTGCATCTTCTTGAAAC  663

Query  576  CCTTGTCTTTGTTTGGATTTTCCCTTTA  603
            ||||||||||||||||||||||||||||
Sbjct  664  CCTTGTCTTTGTTTGGATTTTCCCTTTA  691


 Score =  368 bits (199),  Expect = 3e-101
 Identities = 222/232 (96%), Gaps = 6/232 (3%)
 Strand=Plus/Plus

Query  1    GAGGGAAGaaaaaaaGA-AAGATGAAAGCACCCAACATGGAGACGATAACAGAGTCTCTG  59
            |||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||| 
Sbjct  25   GAGGCAAGAAAAAAAGAGAAGATGAAAGCACCCAACATGGAGACGATAACGGAGTCTCTA  84

Query  60   GAGAAATCGATGCA-GAATTTTTCTCTGAATGATCGGAGAAGAAGGGTCGTCGGAGATGG  118
            |||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  85   GAGAAATCGATG-ATGAATTGTTCTCTGAATGATCGGAGAAGAAGGGTCGTCGGAGATGG  143

Query  119  GTTTGGGAGATCGTCGAGCAACG-A-ACAT-ACTCCGATCTCAGATAGAACATTGGAGCT  175
            ||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||
Sbjct  144  GTTTGGGAGATCGTCGAGCAACGAACACATGACTCCGATCTCAGATAGAACATTGGAGCT  203

Query  176  CAATTCTCACTTATCTCTTCCTTGTCACTGGGAACAGTGTCTTGATCTTAAG  227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  204  CAATTCTCACTTATCTCTTCCTTGTCACTGGGAACAGTGTCTTGATCTTAAG  255



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29035336966


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5