BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933939

Length=278
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G33520.1 | Symbols:  | unknown protein; Has 68 Blast hits to...   335    1e-91


> AT2G33520.1 | Symbols:  | unknown protein; Has 68 Blast hits 
to 68 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa 
- 8; Fungi - 2; Plants - 58; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:14196752-14197706 FORWARD 
LENGTH=610
Length=610

 Score =  335 bits (181),  Expect = 1e-91
 Identities = 231/255 (91%), Gaps = 4/255 (2%)
 Strand=Plus/Plus

Query  2    TTGCAAATCTAAAGGGTTCACAATGGCATCTTACCATGCTTCTCATGAGTCTTATCAACC  61
            ||||||||||||| | |||||||||||||||||||||| ||||||||| || |||||| |
Sbjct  104  TTGCAAATCTAAA-GATTCACAATGGCATCTTACCATGTTTCTCATGATTCATATCAATC  162

Query  62   ACCAGGTCCGTCGCCATTGTACCAACCGATGATAGAGGCTCCACCGCCACCGTATCCACC  121
            ||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  163  ACCAGGTCCTTCACCATTGTACCAACCGATAATAGAGGCTCCACCGCCACCGTATCCACC  222

Query  122  AACGAGAACAAGATATCAAGACTACTACGGTGGCTACGGTCAGCCTCATCCCCCACCGCT  181
            |||  |||| || |||||||| ||||||||||||||||||||||| ||||| ||||| ||
Sbjct  223  AACCCGAACGAGGTATCAAGATTACTACGGTGGCTACGGTCAGCCGCATCCACCACCTCT  282

Query  182  GCGTCCATATAGATCAGAT---GAATACTATAGAGAAGGAGAATATGTTGGTTGCTTTCC  238
             ||||||||||||||||||   ||||||||| |||| |||||||||||||||||||||||
Sbjct  283  ACGTCCATATAGATCAGATCATGAATACTATGGAGACGGAGAATATGTTGGTTGCTTTCC  342

Query  239  TTTTCTCAGAAGCTG  253
             ||||||||||||||
Sbjct  343  GTTTCTCAGAAGCTG  357



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12768008246


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5