BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg933942 Length=997 Score E Sequences producing significant alignments: (Bits) Value AT2G33550.1 | Symbols: | Homeodomain-like superfamily protein ... 1616 0.0 > AT2G33550.1 | Symbols: | Homeodomain-like superfamily protein | chr2:14210032-14211588 REVERSE LENGTH=1194 Length=1194 Score = 1616 bits (875), Expect = 0.0 Identities = 958/996 (96%), Gaps = 13/996 (1%) Strand=Plus/Plus Query 3 AAGGAATATTCCGTTTGAATGGCTCTGGAACAGTTAGGATTAGGAGTGAGCGCCGTTGAC 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 84 AAGGAATATTCCGTTTGAATGGCTCTGGAACAGTTAGGATTAGGAGTGAGCGCCGTTGAC 143 Query 63 GGTGGAGAGAACAGTAGCGCGCCGTCAAATGACGGTGGAGATGACGGCGTTAAGACGGCG 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 144 GGTGGAGAGAACAGTAGCGCGCCGTCAAATGACGGTGGAGATGACGGCGTTAAGACGGCG 203 Query 123 AGACTTCCTCGTTGGACGAGACAAGAGATTCTGGTGCTGATTCAGGGGAAGAGAGTGGCA 182 ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 204 AGACTTCCTCGTTGGACGAGACAAGAGATTCTGGTTCTGATTCAAGGGAAGAGAGTGGCG 263 Query 183 GAGAACAGAGTCCGGCGAGGGAGAGCGGCGGGTATGGCTCTCGGGTCGGGTCAAATGGAG 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 264 GAGAACAGAGTCCGGCGAGGGAGAGCGGCGGGTATGGCTCTCGGGTCGGGTCAAATGGAG 323 Query 243 CCTAAATGGGCTTCGGTATCATCTTACTGCAGACGTCACGGTGTAAATCGTGGGCCGGTT 302 |||||||||||||| || || |||||||| | |||||||||||||||||||||||||||| Sbjct 324 CCTAAATGGGCTTCTGTTTCGTCTTACTGTAAACGTCACGGTGTAAATCGTGGGCCGGTT 383 Query 303 CAGTGCCGGAAAAGATGGAGCAATCTCGCCGGAGATTATAAGAAGATTAAAGAATGGGAG 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 384 CAGTGCCGGAAAAGATGGAGCAATCTCGCCGGAGATTATAAGAAGATTAAAGAATGGGAG 443 Query 363 TCTCAGATTAAGGAAGAGACTGAGTCTTATTGGGTGATGAGGAATGATGTTCGTCGGGAG 422 |||||||||||||||||||||||||| |||||||| |||||||||||||||||| | ||| Sbjct 444 TCTCAGATTAAGGAAGAGACTGAGTCCTATTGGGTTATGAGGAATGATGTTCGTAGAGAG 503 Query 423 AAGAAGCTTCCTGGTTTTTTCGATAAGGAGGTTTATGATATTGTTGACGGTGGTGTGATT 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 504 AAGAAGCTTCCTGGTTTTTTCGATAAGGAGGTTTATGATATTGTTGACGGTGGTGTGATT 563 Query 483 CCTCCGGCGGTTCCGGTTCTTTCGCTTGGATTGGCTCCGGCGTCGGAGGAGGGATTGTTG 542 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 564 CCTCCGGCGGTTCCGGTTCTTTCGCTTGGATTGGCTCCGGCGTCAGACGAGGGATTGTTG 623 Query 543 TCTGATTTAGATCGGAGAGAATCGGTGAGAAGTCCTGAGAAGTTGAATTCTACTCCGGTG 602 ||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 624 TCTGATTTAGATCGGAGAGAA------AG---TCCTGAGAAGTTGAATTCTACTCCGGTG 674 Query 603 GCCAAATCAGTTACTGATGTTATAGACAAAGAGAAGCAAGAAGCTTGTGGAGCAGATCAA 662 || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 675 GCTAAATCAGTTACTGATGTTATAGACAAAGAGAAGCAAGAAGCTTGTGTAGCAGATCAA 734 Query 663 GGTAGAGTGAAAGAGAAACATCCAGAAGCAGCAAACGTGGAAGGTGGATCGACATCACAA 722 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 735 GGTAGAGTGAAAGAGAAACAGCCAGAAGCAGCAAACGTGGAAGGTGGATCGACATCACAA 794 Query 723 GAAGAGAGGAAGCGTAAACGGACATCTTTTGGTgaaaaagaagaagaagaagaagaagaa 782 |||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| Sbjct 795 GAAGAGAGGAAGCGTAAACGGACATCTTTTGGTGAAAAGGAAGA-G--GAAGAAGAAGAA 851 Query 783 ggagaaacaaagaacatgcagagtcaattgatagagatactagaaagaaATGGGCAGTTG 842 |||||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||||||| Sbjct 852 GGAGAAACAAAGAAGATGCAGAATCAGTTGATAGAGATACTAGAAAGAAACGGGCAGTTG 911 Query 843 TTGGCGGCACAGCTTGAGGTTCAGAATTTAAACTTAAAACTAGACAGAGAGCAAAGAAAA 902 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 912 TTGGCGGCACAGCTTGAGGTTCAGAATTTAAACTTAAAACTAGACAGAGAGCAAAGAAAA 971 Query 903 GATCACGGTGATAGCTTAGTCGCTGTTCTCAACAAGCTCGCAGATGCTGTGGCAAAAATC 962 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 972 GATCACGGTGATAGCTTAGTCGCTGTTCTCAATAAGCTCGCTGATGCTGTGGCAAAAATC 1031 Query 963 GCGGATAAGATGTAGATTTAGTCAA-GTTAGTTGTA 997 |||||||||||||||||||||| || |||||||||| Sbjct 1032 GCGGATAAGATGTAGATTTAGTAAAAGTTAGTTGTA 1067 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48827590884 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5