BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933942
Length=997
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33550.1 | Symbols: | Homeodomain-like superfamily protein ... 1616 0.0
> AT2G33550.1 | Symbols: | Homeodomain-like superfamily protein
| chr2:14210032-14211588 REVERSE LENGTH=1194
Length=1194
Score = 1616 bits (875), Expect = 0.0
Identities = 958/996 (96%), Gaps = 13/996 (1%)
Strand=Plus/Plus
Query 3 AAGGAATATTCCGTTTGAATGGCTCTGGAACAGTTAGGATTAGGAGTGAGCGCCGTTGAC 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 AAGGAATATTCCGTTTGAATGGCTCTGGAACAGTTAGGATTAGGAGTGAGCGCCGTTGAC 143
Query 63 GGTGGAGAGAACAGTAGCGCGCCGTCAAATGACGGTGGAGATGACGGCGTTAAGACGGCG 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 GGTGGAGAGAACAGTAGCGCGCCGTCAAATGACGGTGGAGATGACGGCGTTAAGACGGCG 203
Query 123 AGACTTCCTCGTTGGACGAGACAAGAGATTCTGGTGCTGATTCAGGGGAAGAGAGTGGCA 182
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 204 AGACTTCCTCGTTGGACGAGACAAGAGATTCTGGTTCTGATTCAAGGGAAGAGAGTGGCG 263
Query 183 GAGAACAGAGTCCGGCGAGGGAGAGCGGCGGGTATGGCTCTCGGGTCGGGTCAAATGGAG 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 GAGAACAGAGTCCGGCGAGGGAGAGCGGCGGGTATGGCTCTCGGGTCGGGTCAAATGGAG 323
Query 243 CCTAAATGGGCTTCGGTATCATCTTACTGCAGACGTCACGGTGTAAATCGTGGGCCGGTT 302
|||||||||||||| || || |||||||| | ||||||||||||||||||||||||||||
Sbjct 324 CCTAAATGGGCTTCTGTTTCGTCTTACTGTAAACGTCACGGTGTAAATCGTGGGCCGGTT 383
Query 303 CAGTGCCGGAAAAGATGGAGCAATCTCGCCGGAGATTATAAGAAGATTAAAGAATGGGAG 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 CAGTGCCGGAAAAGATGGAGCAATCTCGCCGGAGATTATAAGAAGATTAAAGAATGGGAG 443
Query 363 TCTCAGATTAAGGAAGAGACTGAGTCTTATTGGGTGATGAGGAATGATGTTCGTCGGGAG 422
|||||||||||||||||||||||||| |||||||| |||||||||||||||||| | |||
Sbjct 444 TCTCAGATTAAGGAAGAGACTGAGTCCTATTGGGTTATGAGGAATGATGTTCGTAGAGAG 503
Query 423 AAGAAGCTTCCTGGTTTTTTCGATAAGGAGGTTTATGATATTGTTGACGGTGGTGTGATT 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 AAGAAGCTTCCTGGTTTTTTCGATAAGGAGGTTTATGATATTGTTGACGGTGGTGTGATT 563
Query 483 CCTCCGGCGGTTCCGGTTCTTTCGCTTGGATTGGCTCCGGCGTCGGAGGAGGGATTGTTG 542
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 564 CCTCCGGCGGTTCCGGTTCTTTCGCTTGGATTGGCTCCGGCGTCAGACGAGGGATTGTTG 623
Query 543 TCTGATTTAGATCGGAGAGAATCGGTGAGAAGTCCTGAGAAGTTGAATTCTACTCCGGTG 602
||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 624 TCTGATTTAGATCGGAGAGAA------AG---TCCTGAGAAGTTGAATTCTACTCCGGTG 674
Query 603 GCCAAATCAGTTACTGATGTTATAGACAAAGAGAAGCAAGAAGCTTGTGGAGCAGATCAA 662
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 675 GCTAAATCAGTTACTGATGTTATAGACAAAGAGAAGCAAGAAGCTTGTGTAGCAGATCAA 734
Query 663 GGTAGAGTGAAAGAGAAACATCCAGAAGCAGCAAACGTGGAAGGTGGATCGACATCACAA 722
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 735 GGTAGAGTGAAAGAGAAACAGCCAGAAGCAGCAAACGTGGAAGGTGGATCGACATCACAA 794
Query 723 GAAGAGAGGAAGCGTAAACGGACATCTTTTGGTgaaaaagaagaagaagaagaagaagaa 782
|||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||
Sbjct 795 GAAGAGAGGAAGCGTAAACGGACATCTTTTGGTGAAAAGGAAGA-G--GAAGAAGAAGAA 851
Query 783 ggagaaacaaagaacatgcagagtcaattgatagagatactagaaagaaATGGGCAGTTG 842
|||||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct 852 GGAGAAACAAAGAAGATGCAGAATCAGTTGATAGAGATACTAGAAAGAAACGGGCAGTTG 911
Query 843 TTGGCGGCACAGCTTGAGGTTCAGAATTTAAACTTAAAACTAGACAGAGAGCAAAGAAAA 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 TTGGCGGCACAGCTTGAGGTTCAGAATTTAAACTTAAAACTAGACAGAGAGCAAAGAAAA 971
Query 903 GATCACGGTGATAGCTTAGTCGCTGTTCTCAACAAGCTCGCAGATGCTGTGGCAAAAATC 962
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 972 GATCACGGTGATAGCTTAGTCGCTGTTCTCAATAAGCTCGCTGATGCTGTGGCAAAAATC 1031
Query 963 GCGGATAAGATGTAGATTTAGTCAA-GTTAGTTGTA 997
|||||||||||||||||||||| || ||||||||||
Sbjct 1032 GCGGATAAGATGTAGATTTAGTAAAAGTTAGTTGTA 1067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48827590884
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5