BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933944
Length=1528
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33570.1 | Symbols: | Domain of unknown function (DUF23) | ... 2392 0.0
> AT2G33570.1 | Symbols: | Domain of unknown function (DUF23)
| chr2:14217223-14219252 FORWARD LENGTH=1838
Length=1838
Score = 2392 bits (1295), Expect = 0.0
Identities = 1454/1532 (95%), Gaps = 5/1532 (0%)
Strand=Plus/Plus
Query 1 CCGTCGCCGGGATAAAAAACATGAGGAAGGAAGTTTTGCCGCCGGTGCTATCAACCACCA 60
|||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 119 CCGTCGTCGGGAAAAAAAACATGAGGAAGGAAGTTTTGCCGCCGGTGTTATCAACCACCA 178
Query 61 CCGTCTGCTTCGAGAAGAAGCCATTAATTGCTACATTGCTAGCTCTCTCTCTCGTCATGA 120
| || || ||||||||||| ||| ||||||||||||| ||||||||||||||||||||||
Sbjct 179 CAGTATGTTTCGAGAAGAAACCAATAATTGCTACATTACTAGCTCTCTCTCTCGTCATGA 238
Query 121 TTATCTGGAACCTTCCTCCTTACTATCACAACCTCATCTCCACCGCACGCCCCTGCTCCG 180
|| |||||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 239 TTGTCTGGAACCTTCCTCCTTACTACCACAACCTCATCTCCACCGCTCGTCCCTGCTCCG 298
Query 181 CCGTcaccaccaccaccaccacca---TACTTTCCTCATCGAACTTCACAGCGGC-GACG 236
|||||||||||||||||||||||| |||| ||||||||||||||||| |||| || |
Sbjct 299 CCGTCACCACCACCACCACCACCACCTTACTCTCCTCATCGAACTTCACTTCGGCGGA-G 357
Query 237 AATTTCACCACCTCTCTCTCAACCACAACTGCTGCTGCTTCTCAGAAGTACGATTCAACT 296
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 358 AATTTCACCACCTCTCTCTCAACGACAACTGCAGCAGCTTCTCAGAAGTACGATTCAACT 417
Query 297 CCCTCAGATCCGAACAAACGCGTTTTCCAACCGTTCGGAAACGCGGCGGCGTTATTCGTA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CCCTCAGATCCGAACAAACGCGTTTTCCAACCGTTCGGAAACGCGGCGGCGTTATTCGTA 477
Query 357 CTAATGGGAGCTTACCGCGGCGGTCCAACGACGTTTTCCGTTATCGGACTCGCGTCAAAA 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 478 CTAATGGGAGCTTACCGCGGCGGTCCAACGACGTTTTCCGTTATCGGACTCGCGTCGAAA 537
Query 417 CCGATCCACGTTTTCGGGAAGCCATGGTACAAGTGTGAGTGGATATCAAACAATGGAACT 476
||||||||||||| ||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 538 CCGATCCACGTTTACGGAAAACCATGGTACAAGTGTGAGTGGATATCTAACAATGGAACT 597
Query 477 TCGATTCGAGCTAAAGCACAGAAGATTCTACCAGATTGGGGCTATGGCCGAGTCTACACC 536
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 598 TCGATTCGAGCTAAAGCACAGAAGATTCTACCAGATTGGGGATACGGACGAGTCTACACC 657
Query 537 GTCGTCGTCGTCAATTGCACTTTCAATTCAAACCCTAACTCCGATAACACCGGAGGTAAG 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GTCGTCGTCGTCAATTGCACTTTCAATTCAAACCCTAACTCCGATAACACCGGAGGTAAA 717
Query 597 CTCATACTCAACGCTTACTACAACGAATCTCCGAAACTCTTTGAACGATTCACTACGTTA 656
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 718 CTCATTCTCAACGCTTACTACAACGAATCTCCCAAACTCTTTGAACGATTCACTACGTTA 777
Query 657 GAGGAATCAGCTGGAATCTACGACGAATCGAAATACTCGCCGCCATATCAGTACGATTAC 716
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 778 GAAGAATCAGCTGGAATCTACGACGAATCGAAATACTCGCCGCCGTATCAGTACGATTAC 837
Query 717 CTCTACTGTGGCTCGTCTCTGTACGGAAACGTGAGCTCGTCGCGTATGAGAGAGTGGATG 776
||||| ||||||||||| |||||||| ||||||||| |||||||||||||||||||||||
Sbjct 838 CTCTATTGTGGCTCGTCACTGTACGGTAACGTGAGCGCGTCGCGTATGAGAGAGTGGATG 897
Query 777 GCTTACCATGCTTGGTTCTTTGGTGACAAATCGCATTTTGTTTTCCACGATGCTGGTGGA 836
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GCTTACCACGCTTGGTTCTTTGGTGACAAATCGCATTTTGTTTTCCACGATGCTGGTGGT 957
Query 837 GTGTCGCCGGAAGTTAGGAAGGTTCTTGAGCCGTGGATTCGAGCTGGGAGGGTCACGGTT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GTGTCGCCGGAAGTTAGGAAGGTTCTTGAGCCGTGGATTCGAGCTGGGAGGGTCACGGTT 1017
Query 897 CAGGATATTAGGGATCAGTCGCAGTATGATGGTTACTACTATAATCAGTTTCTTATTGTT 956
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CAGAATATTCGGGATCAGTCGCAGTATGATGGTTACTACTATAATCAGTTTCTTATTGTT 1077
Query 957 AATGATTGTTTGCATCGGTATCGATATGCTGCGAATTGGACCTTCTTCTTCGATGTTGAT 1016
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1078 AATGATTGCTTGCATCGGTATCGATACGCTGCGAATTGGACCTTCTTCTTCGATGTCGAT 1137
Query 1017 GAGTACATATATCTGCCGCATGGGAATACACTTGAATCTGTGCTCCACGAGTTCTCGGTG 1076
||||| || ||| |||||||||| |||||||| ||||| |||||| | |||||||||||
Sbjct 1138 GAGTATATCTATTTGCCGCATGGTAATACACTCGAATCCGTGCTCGATGAGTTCTCGGTT 1197
Query 1077 AATACGCAGTTTACGATTGAGCAGAATCCAATGTCTAGTGTTCTTTGCTTAAATGACTCC 1136
|| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1198 AACACGCAGTTTACGATTGAGCAGAATCCAATGTCTAGTGTTCTTTGCATAAACGACTCT 1257
Query 1137 TCTCAAGATTATCCCAGGCAATGGGGATTTGAGAAGTTGCTATTTAAGGATTCAAGAACA 1196
|||||||||||||| |||||||||||||||||||| ||| |||||||||||||||| ||
Sbjct 1258 TCTCAAGATTATCCAAGGCAATGGGGATTTGAGAAATTGTTATTTAAGGATTCAAGGACG 1317
Query 1197 AACATACGACGTGATAGGAAATATGCGATCCAAGCGAAGAACGCATTTGCCACAGGAGTT 1256
|| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1318 AAGATACGACGTGATAGAAAATATGCAATCCAAGCGAAGAACGCATTTGCTACAGGAGTT 1377
Query 1257 CACATGTCTGAAAACATAGTAGGCAAAACACTACACAAGACAGAGACAAAGATCCGTTAT 1316
|| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1378 CATATGTCTGAAAACATTGTAGGCAAAACACTACACAAGACAGAGACAAAGATTCGTTAT 1437
Query 1317 TACCATTACCACAACACTATAACTGTGCATGAGGAGCTTTGCAGAGAGATGTTACCAAAT 1376
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1438 TACCATTACCACAACACCATAACTGTGCATGAGGAGCTTTGTAGAGAGATGTTACCAAAT 1497
Query 1377 TCAGCCAAGAAGAAGGTGACATTGTACAATAAGCTTCCGTATGTGTATGATGACAACATG 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 TCAGCCAAGAAGAAGGTGACATTGTACAATAAGCTTCCGTATGTGTATGATGACAACATG 1557
Query 1437 AAGAAGCTAGTGAAGACGATTAAAGAGTTTGAGCAGAAAAAACTTGGGACCGATGTGAAG 1496
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1558 AAGAAGCTAGTGAAGACGATTAAAGAGTTTGAGCAGAAAAAACTTGGGACGGATGTGAAG 1617
Query 1497 AATTTCTCATGACCAGAATATAACTGTAATCT 1528
||||||||||||||| |||||| |||||||||
Sbjct 1618 AATTTCTCATGACCATAATATAGCTGTAATCT 1649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75401218590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5