BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933948
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33610.1 | Symbols: ATSWI3B, CHB2, SWI3B | switch subunit 3 ... 2189 0.0
> AT2G33610.1 | Symbols: ATSWI3B, CHB2, SWI3B | switch subunit
3 | chr2:14228972-14231309 FORWARD LENGTH=1621
Length=1621
Score = 2189 bits (1185), Expect = 0.0
Identities = 1365/1453 (94%), Gaps = 8/1453 (1%)
Strand=Plus/Plus
Query 1 GTTAGTTGAACAGAGAGAGTCATGGCCATGAAAGCTCTCGATTCCGGCGGATCTGGGGAA 60
||||||| || | |||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 33 GTTAGTT-AA-ACAGAGAGTCATGGCCATGAAAGCTCCCGATCCCGGCGGATCTGGGGAA 90
Query 61 ATTCTTCCAATTACTCACTCTCTTTCCGAAACTACGTCTGGAGTTG-C-C-GCAGCTTCG 117
||||| || | |||| |||||||||||||||||||||||||| | | | ||||||||
Sbjct 91 ATTCTCCCGAGCACTCCCTCTCTTTCCGAAACTACGTCTGGAGGCGCCGCAGCAGCTTCT 150
Query 118 CAGTCGCCTCAACCGCCGTCTTCTTCTTCCGATATCGACACTA-TCTACGTACCTAGCTA 176
||||| ||||| |||||||||||||||||||||||| | || || |||||||||||||
Sbjct 151 AAGTCGGCTCAATTGCCGTCTTCTTCTTCCGATATCGATAATATTC-ACGTACCTAGCTA 209
Query 177 CTCCCGTTGGTTTTCGTGGACGGGCATCAACGATTGCGAGGTCCGTTCACTGCCGGAATT 236
|||| |||||||||| ||||| | ||| ||||||||||||||||| ||||||||||||||
Sbjct 210 CTCCAGTTGGTTTTCATGGACCGACATTAACGATTGCGAGGTCCGGTCACTGCCGGAATT 269
Query 237 CTTCGATTCGAGATCTTCATCCAAAAACCCTAAGTTTTACCTCTACTTGAGGAATTCGAT 296
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 270 TTTCGATTCGAGATCTTCATCCAAAAACCCTAAGTTTTATCTCTACTTGAGGAACTCGAT 329
Query 297 TATTAAGCAGTACAGAGACGACCATCCTCGGAAGATTAGCTTCACTGACGTTCGGAGAAC 356
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 330 TATTAAGCAGTACAGAGACGACCATCCTCGGAAGATTAGTTTCACTGACGTTCGGAGAAC 389
Query 357 TCTCGTCAGTGATGTTGTCTCTATTCGTCGCGTATTTGATTTCCTAGACTCATGGGGGCT 416
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||
Sbjct 390 TCTCGTCAGTGATGTTGTCTCTATTCGTCGCGTCTTTGATTTCCTCGATTCATGGGGACT 449
Query 417 TATCAACTATACTAGCTCCGCCTCTGCTAAGCCGCTCAAGTGGGACGAAAAAGAGGCCGG 476
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 450 TATCAACTATAATAGCTCCGCCTCTGCTAAGCCGCTCAAGTGGGAAGAAAAAGAGGCCGG 509
Query 477 AAAATCCGTCGGAGATGCTGCTTCTGAGCCATCCACTACTGTCAAAGAAACTGCCAAGAG 536
|||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 510 AAAATCCGCCGGAGATGCTGCTTCTGAGCCAGCCACAACTGTCAAAGAAACTGCCAAGAG 569
Query 537 AATCTGCAATGGCTGCAAATCAATTTGCAGCATAGCTTGTTTCGCCTGTGATAAGTATGA 596
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 570 AAACTGCAATGGCTGCAAAGCAATTTGCAGCATAGCTTGTTTCGCCTGTGATAAGTATGA 629
Query 597 CTTGACATTGTGTGCGAGGTGCTATGTCCGTAGTAACTATCGTGTTGGTATTAACTCCTC 656
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 630 CTTGACATTGTGTGCGAGGTGCTATGTTCGTAGTAATTATCGTGTTGGTATTAACTCCTC 689
Query 657 GGAGTTTAAGCGAGTTGAGATTAGTGAGGAGTCAAAGATACAGTGGTCTGAAAAGGAAAT 716
||||||||| ||||||||||||||||||||||||||| | |||||||||| ||||||||
Sbjct 690 GGAGTTTAAACGAGTTGAGATTAGTGAGGAGTCAAAGCCAGAGTGGTCTGATAAGGAAAT 749
Query 717 TCTGCTTCTGCTGGAAGCTGTTATGCACTATGGAGATGATTGGAAGAAGGTTGCACCGCA 776
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 750 TCTGCTGCTGCTGGAAGCTGTTATGCACTATGGAGATGATTGGAAGAAGGTTGCATCGCA 809
Query 777 TGTTACTGGTAGAACCGAGAAGGATTGTGTTTCTCAGTTTGTCAAGCTTCCGTTTGGGGA 836
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 TGTTATTGGTAGAACGGAGAAGGATTGTGTTTCTCAGTTTGTCAAGCTTCCGTTTGGGGA 869
Query 837 ACAGTTTGTAAAAGAGTCTGACTTTGAGGATGGTTTAGAGGCGTTTGATCAGATCAAGGG 896
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 870 ACAGTTTGTAAAAGAGTCTGACTCTGAGGATGGTTTAGAGATGTTTGATCAGATCAAGGA 929
Query 897 CTCTGCTATTCCTGAATCTGAAGGAATAGATAAAGACGGTTCTTCTCCCAATAAGCGGAT 956
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 930 CTCTGATATTCCTGAATCTGAAGGAATAGATAAAGACGGTTCTTCTCCCAACAAGCGGAT 989
Query 957 GAAATTAACGCCTCTTGCAGATGCAAGCAACCCAATAATGGCTCAGGCTGCTTTTCTTTC 1016
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 CAAATTAACACCTCTTGCAGATGCAAGCAACCCAATAATGGCTCAGGCTGCTTTTCTTTC 1049
Query 1017 AGCTTTGGCTGGCACAAATGTTGCAGAAGCAGCAGCTCGAGCGGCAGTGACAGCTTTATC 1076
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1050 AGCTTTGGCTGGCACAAATGTTGCAGAAGCAGCAGCTCGAGCGGCAGTGAGAGCTTTATC 1109
Query 1077 TGATGTAGACTACGACGCTGACAAAAACGCCAGTGGAGACTCAAATCGACAAGAGGCCAA 1136
||||||||||||||| |||||||||||||||||| ||||| ||||||||||||| |||||
Sbjct 1110 TGATGTAGACTACGAGGCTGACAAAAACGCCAGTAGAGACCCAAATCGACAAGATGCCAA 1169
Query 1137 TGGTGCTTCGAGTGGTGAAACCATTAGAAACGACTCTGAAAGAGCTTGGGCAGATGCGAA 1196
|| ||| |||||||||||||||| ||||||||| ||||||||||||||||||||||| ||
Sbjct 1170 TGCTGCATCGAGTGGTGAAACCACTAGAAACGAATCTGAAAGAGCTTGGGCAGATGCAAA 1229
Query 1197 GTCTCTGATCGAGAAGGAAGAGCAGGAGGTAGAAGTAGCAATCAAAGAGACTGTTGAAGT 1256
|||| | || |||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1230 GTCTTTAATTGAGAAGGAAGAGCATGAGGTAGAAGGAGCAATCAAAGAGACTGTTGAAGT 1289
Query 1257 TGAGATGAAGAAGATCCGAGATAGGATTGTACATTTCGAGAAATTGGATTTGGAAATGGA 1316
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1290 TGAGATGAAGAAGATCCGAGATAGGATTGTTCATTTCGAGAAATTGGATTTGGAAATGGA 1349
Query 1317 GAGAAGCCGGAAACAATTGGAGGAGATGAAGAATCTGCTTTTCGTTGATCAATTAAACAT 1376
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1350 GAGAAGCCGGAAACAATTGGAGGAGGTGAGGAATCTGCTTTTCGTTGATCAATTAAACAT 1409
Query 1377 TTTCTTCCACACAAGAAAAGCCCGGACATCTGAAGATAGAGTAGAGTGTTAGAACACACT 1436
|||||||||||| ||||||||||||| | ||||||||||| |||||||||||||| ||||
Sbjct 1410 TTTCTTCCACACCAGAAAAGCCCGGAAAACTGAAGATAGAATAGAGTGTTAGAACGCACT 1469
Query 1437 TAAATTTGAAACT 1449
||| |||||||||
Sbjct 1470 TAA-TTTGAAACT 1481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71435375535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5