BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933951
Length=1763
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33640.1 | Symbols: | DHHC-type zinc finger family protein ... 2806 0.0
> AT2G33640.1 | Symbols: | DHHC-type zinc finger family protein
| chr2:14239213-14242365 FORWARD LENGTH=2110
Length=2110
Score = 2806 bits (1519), Expect = 0.0
Identities = 1687/1765 (96%), Gaps = 23/1765 (1%)
Strand=Plus/Plus
Query 2 TTA-GGGTTTTGGGTTTCTTCACTGCAATGGCGAGAAGACATGGATGGCAACTTCCAGCT 60
||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 261 TTAGGGGTTGTGGGTTTCTTCATTGCAATGGCGAGAAGACATGGATGGCAACTTCCAGCT 320
Query 61 CACACATTTCAGGTTGTTGCTATAACTGTATTTTTCTTGCTAACTGTCGCTTACTATGCC 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 321 CACACATTTCAGGTTGTTGCCATAACTGTATTTTTCTTGCTAACTGTCGCTTACTATGCC 380
Query 121 TTCTTTGCTCCGTTTCTTGGAAACAAACTCTATGAATATATTGCCATTGGTGTTTACTCT 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 TTCTTTGCTCCATTTCTTGGAAACAAACTCTATGAATATATTGCCATTGGTGTTTACTCT 440
Query 181 TTCCTGGCGTTTTCGGTTTTAGTTCTTTACATTCGATGCACTGGTATAGATCCTGCAGAT 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 441 TTCCTGGCGTTTTCGGTTTTAGTTCTTTACATCCGATGCACTGGTATAGATCCTGCAGAT 500
Query 241 CCTGGAATCTTTGTGAAGGCTGATTACACTCCAGCTCATAAGTCACAGAATAGTAACTAT 300
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 501 CCTGGAATCTTTGTGAAGGCTGATAACACTCCAGCTCATAAGTCACAGAACAGTAACTAT 560
Query 301 GTGCCTGATAATGCTTCAGCAATTGATGGTGGGCCATATATTAGACACGGCTCAGGTTGC 360
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 GTTCCTGAGAATGCTTCAGCAATTGATGGTGGGCCATATATTAGACACGGCTCAGGTTGC 620
Query 361 TGTAATGCTATAGGAAGATTCATTTGTGGTTGTTTAGTCATACAAGATTGCCGTAGAGAT 420
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 621 TGTAGTGCTATAGGAAGATTCATTTGTGGTTGTTTAGTAATACAAGATTGCCGTAGAGAT 680
Query 421 ACTCAACAAGAGCAATCGAACGAACAAGAAGAAGCTCTGTTCTGCTCATTGTGCAATGCT 480
|| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 681 ACCCAACAAGAGCAATCAAACGAACAAGAAGAAGCTTTGTTCTGCTCATTGTGCAATGCT 740
Query 481 GAGGTACGTATGTTTAGCAAGCACTGTCGAAGCTGTGGCAAGTGTGTAGATGGGTTTGAT 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 741 GAGGTACGTATGTTTAGCAAGCACTGTCGAAGTTGTGGCAAGTGTGTAGATGGGTTTGAT 800
Query 541 CATCATTGCCGGTGGCTGAATAACTGTGTGGGGCAGAAAAACTACATCAGCTTTGTGTGT 600
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 CACCATTGCCGGTGGCTGAATAACTGTGTGGGGCAGAAAAACTACATCAGCTTTGTGTGT 860
Query 601 CTTATGGCGGCAAGCTT-TTTCTGGCTGATAGCTGAATTTGGAGTTGGTGTTACTGTATT 659
|||||||| |||||||| ||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 861 CTTATGGCAGCAAGCTTCTTT-TGGCTTATAGCTGAATTTGGAGTTGGTGTTACTGTATT 919
Query 660 TGTTCGATGTTTAGTGGACCAAAAGGCAATGGAACATCTTATAACTGAAAAGCTTGGGCT 719
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 920 TGTTCGATGTTTCGTGGACCAAAAGGCGATGGAACATCTTATAACTGAAAAGCTTGGGCT 979
Query 720 TGGATTCTCCCGTCCTCCATTTGCCGCTGTTGTGGTTGTTTGTACAACTCTCTCGTTACT 779
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 TGGGTTCTCCCGTCCTCCATTTGCCGCTGTTGTGGTTGTTTGTACAACTCTCTCGTTACT 1039
Query 780 GGCTTTGATACCTCTTGGGGAACTTTTCTTTTTCCATATCATTTTGATCCGAAAGGGAAT 839
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1040 GGCTTTGATACCTCTTGGGGAACTTTTCTTTTTCCATATGATTTTGATCCGAAAGGGAAT 1099
Query 840 CACAACATATGAATATGTTGTTGCCCTGAGAGCGCAAACTGAACAACTTGGAACATCTGT 899
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1100 CACAACATATGAATATGTTGTTGCCCTGAGAGCGCAAACTGAACCACTTGGAACATCTGT 1159
Query 900 AGATGAGCTAGACCAAACAAGCCAGCATCCTTCACCTGCAAGCTCAGCTGTGACAGCCAC 959
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1160 AGATGAGCTAGACCAAACAAGCCAGTATCCTTCACCTGCAAGCTCAGCTGTGACAGCCAC 1219
Query 960 GAGTGCTAGAAGCTCTCTCGGATTGAGCATTCAATACCGTGGTGTCTCCTTGTGTACACC 1019
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1220 GAGTGCTAGAAGCTCTCTCGGATTGAGCATTCAATACCGTGGTGCCTCCTTGTGTACACC 1279
Query 1020 TCCAAACATATTCATGGACCAACAGCAGGACGATGTTATCCAGCATTTGGAGCCTGGACC 1079
|||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1280 CCCAAACATATTCGTGGACCAACAG--G-ACGATGTTATCCAGCATTTGGAGCCTGGACC 1336
Query 1080 TGTACGATCCACAATAGATCCCGACTCGCTTTCACAGAAGAAGCCACCTCAGCGTCAACA 1139
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1337 TGTACGATCCACAATAGATCCCGACTCACTTTCACAGAAGAAGCCACCTCAGCGTCAACA 1396
Query 1140 AGTAAGGATCAATCCATGGAAGCTGGCAAAACTCGACTCACAAGAAGCATCTAAAGCAGC 1199
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1397 AGTAAGGATCAATCCATGGAAGCTGGCAAAACTTGACTCAAAAGAAGCATCTAAAGCAGC 1456
Query 1200 TGCAAAAGCACGTGCATCTTCATCAGTGCTTCTTCCAGTAAGTTCCCGGCAAAACCCTTA 1259
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1457 TGCAAAAGCACGTGCATCTTCATCAGTGCTTCTTCCTGTAAGTTCGCGGCAAAACCCTTA 1516
Query 1260 CAAAACCAGCAGCAATGTAAGCGGGAGAAGCAGCCCCGCAAGTACCCATCACACTAGAAA 1319
|||||||||||||||||||||||||||||||||||||| ||| | || || || |
Sbjct 1517 CAAAACCAGCAGCAATGTAAGCGGGAGAAGCAGCCCCGGAAG-AGGCAA-AC-CT-G--- 1569
Query 1320 AGGCAAAGCTGATTTAGAGTCTTGTAGCCTTAGTAGTCCAGGTTTGACAAGAGATCACTT 1379
| ||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1570 ---C-----TGATTCAGAGTCTTGTAGCCTTAGTAGTCCAGGTTTGACGAGAGATCACTT 1621
Query 1380 CAACCCAATGTACATGTCATCACCAGCTAACGAGTCACCATTAAACGAGGAAGAAAGCAG 1439
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1622 CAACCCAATGTACATGTCATCACCAGCTAACGAGTCACCTTTAAACGAGGAAGAAAGCAG 1681
Query 1440 AAATGCTGTTGTTGCAGCTAGAAGAAACTTGCCGTCAAACGATGAGAGTTCAGTAGTTTG 1499
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1682 AAATGCTGTTGTTGCAGCTAGAAGAAACTTGCCGTCAAGCGATGAGAGTTCAGTAGTTTG 1741
Query 1500 GGATCCAGAAGCTGGCCGATTTGTATCATCGTCTCGGATTCCCGGAACAGATTTTGGCAG 1559
|||||||||||||||||| |||||||| | |||||||||||||||||||||| |||| ||
Sbjct 1742 GGATCCAGAAGCTGGCCGGTTTGTATCGTTGTCTCGGATTCCCGGAACAGATGTTGG-AG 1800
Query 1560 -TCCTCTTGGTAATGAACGTCTCAACACCATAACTTGTTCTGGGACTGATGGTAACAGAA 1618
|||||||||||||||| |||||||||||||||||| | ||||||||||| ||| |||||
Sbjct 1801 GTCCTCTTGGTAATGAATGTCTCAACACCATAACTTCTACTGGGACTGATCGTAGCAGAA 1860
Query 1619 GGGCTAGAGGAAACCCATTGACTGGATATTTCCAACAGGTTAGATCACAGAGAGGAGACC 1678
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1861 GGGCTAGAGGAAACCCATTGACTGGTTATTTTCAACAGGTTAGATCACAGAGAGGAGACC 1920
Query 1679 AACTTCCAGTGTTTATGCCTACTGATTCTCAACTCCACAGACACTTATCTACTAGATTCC 1738
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1921 AACTTCCAGTGTTTATGCCTACTGATTCTCAACTGCACAGACATTTATCTACTAGATTCC 1980
Query 1739 ACTAGATACATTTTGTAGATCACCA 1763
| |||| ||||||||||||||||||
Sbjct 1981 ATTAGAAACATTTTGTAGATCACCA 2005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87198346665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5