BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933952

Length=677
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G67455.1 | Symbols:  | F-box and associated interaction doma...  56.5    3e-07


> AT1G67455.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr1:25268145-25269475 FORWARD LENGTH=651
Length=651

 Score = 56.5 bits (30),  Expect = 3e-07
 Identities = 36/39 (92%), Gaps = 0/39 (0%)
 Strand=Plus/Plus

Query  71   ACACTAGGCTCGTGGTTTGGAACCCGTATACGGGGCAAA  109
            |||||||||||||||||||||||||||||  |||| |||
Sbjct  176  ACACTAGGCTCGTGGTTTGGAACCCGTATTTGGGGAAAA  214



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32752663844


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5