BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933956
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33700.1 | Symbols: | Protein phosphatase 2C family protein... 2174 0.0
> AT2G33700.1 | Symbols: | Protein phosphatase 2C family protein
| chr2:14253424-14255993 FORWARD LENGTH=2128
Length=2128
Score = 2174 bits (1177), Expect = 0.0
Identities = 1262/1303 (97%), Gaps = 6/1303 (0%)
Strand=Plus/Plus
Query 1 TGATTCAGAGAAGAACTCAGCGATGAGTATGGATTTTTCACCTTTGTTAACGGTTCTTGA 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 755 TGATTCAGAGAAGAACTCACCGATGAGTATGGATTTTTCACCTTTGTTAACGGTTCTTGA 814
Query 61 GGGAGATTTCAACAAGGACAAGGCTTCTTCTGCAACAGAAATTGATACTTTAGAGAACTT 120
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 815 GGGAGATTTCAACAAGGATAATACTTCTTCTGCAACAGAAATTGATACTTTAGAGAACTT 874
Query 121 AGATGACACTAAGCAGATAAGTAAAGGAAAACCTCCGAGGCACCTCACAAGCAGTGCTAC 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 AGATGACACTAGGCAGATAAGTAAAGGAAAACCTCCGAGGCACCTCACAAGCAGTGCTAC 934
Query 181 TAGGCTGCAGCTTGCAGCCAATGCGGATGTGGATGTTTGTAATTTGGTTATGAAGTCACT 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 935 TAGGCTGCAGCTTGCAGCCAATGCGGATGTGGATGTTTGTAACTTGGTTATGAAGTCACT 994
Query 241 TGATGAAAAATCGGAGTTTCTGCCTGTATACCGATCAGGAAGTTGTGCTGAGCAAGGGGC 300
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 995 TGATGACAAATCAGAGTTTCTACCTGTATACCGATCAGGAAGTTGTGCTGAGCAAGGGGC 1054
Query 301 AAAACAGTTCATGGAAGATGAACACATTTGCATCGATGATCTTGTTAATCATCTTGGTGC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 AAAACAGTTCATGGAAGATGAACACATTTGCATCGATGATCTTGTTAATCATCTTGGTGC 1114
Query 361 AGCTGTTCAATGCTCTTCTCTTGGAGCCTTCTATGGGGTATTTGATGGCCACGGTGGCAC 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 AGCTATTCAATGCTCTTCTCTTGGAGCCTTCTATGGGGTATTTGATGGCCACGGTGGCAC 1174
Query 421 AGATGCAGCACACTTTGTTAGAAAGAACATACTGAGATTCATTGTAGAGGACTCCTCCTT 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1175 AGATGCAGCACACTTTGTTAGAAAGAACATTCTGAGATTCATTGTAGAGGACTCCTCCTT 1234
Query 481 CCCACTATGCGTAAAGAAGGCAATTAAGAGTGCTTTCTTAAAAGCTGATTATGAATTTGC 540
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1235 CCCACTATGCGTAAAGAAAGCAATTAAGAGTGCTTTCTTAAAAGCTGATTATGAATTTGC 1294
Query 541 AGATGATTCTTCTCTTGACATCTCTTCTGGGACCACTGCGCTTACAGCTTTTATTTTTGG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 AGATGATTCTTCTCTTGACATCTCTTCTGGGACCACTGCGCTTACAGCTTTTATTTTTGG 1354
Query 601 AAGGAGGTTGATAATTGCAAATGCTGGTGATTGCCGAGCAGTACTGGGGAGAAGAGGTAG 660
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 ACGGAGGTTGATAATTGCAAATGCTGGTGATTGCCGAGCAGTACTGGGGAGAAGAGGTAG 1414
Query 661 AGCAATTGAGTTGTCCAAAGATCACAAACCAAACTGCACCGCCGAGAAAGTAAGAATAGA 720
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1415 GGCAATTGAGTTGTCCAAAGATCACAAACCAAACTGCACAGCCGAGAAAGTAAGAATAGA 1474
Query 721 AAAGTTAGGTGGAGTTGTGTATGATGGCTACCTCAACGGGCAACTATCAGTTGCACGTGC 780
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1475 AAAGTTAGGTGGAGTTGTGTATGACGGTTACCTCAACGGGCAACTATCAGTTGCACGTGC 1534
Query 781 CATTGGAGACTGGCACATGAAAGGTCCCAAAGGATCTGCTTGTCCTCTAAGCCCAGAGCC 840
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1535 CATTGGAGACTGGCACATGAAAGGTCCCAAAGGCTCTGCTTGTCCGCTAAGCCCAGAGCC 1594
Query 841 AGAGTTGCAAGAGACAGACCTGAGTGAAGACGATGAGTTCTTGATAATGGGATGTGACGG 900
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1595 AGAGTTGCAAGAGACAGACCTGAGTGAAGACGACGAGTTCTTGATAATGGGATGTGATGG 1654
Query 901 TCTGTGGGATGTGATGAGCAGTCAGTGCGCTGTGACAATCGCTAGGAAGGAACTGATGAT 960
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1655 TCTGTGGGATGTGATGAGCAGCCAGTGCGCTGTGACAATAGCTAGGAAGGAACTGATGAT 1714
Query 961 TCATAACGATCCAGAGAGATGCTCTAGAGAGCTTGTGAGGGAGGCCCTTAAACGGAATAC 1020
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1715 TCATAATGATCCAGAGAGATGCTCTAGAGAGCTTGTGAGGGAGGCCCTTAAACGGAATAC 1774
Query 1021 GTGTGACAATTTAACAGTGATTGTAGTGTGCTTCTCTCCGGATCCTCCACAGAGGATAGA 1080
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1775 ATGTGACAATTTGACAGTGATTGTTGTGTGCTTCTCTCCGGATCCTCCACAGAGGATAGA 1834
Query 1081 GATCCGAATGCAGTCACGGGTGAGGCGGAGCATATCTGCGGAAGGGTTAAACCTACTCAA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1835 GATCCGAATGCAGTCACGGGTGAGGCGGAGCATATCTGCGGAAGGGTTAAACCTACTCAA 1894
Query 1141 AGGCGTGCTGGATGGGTACCCGTGAGAATGTTGTGTTATACGTTACTTTGTGAGACTATT 1200
||||||||| ||||| || ||||||| ||||| |||| ||||||||||||||||||||||
Sbjct 1895 AGGCGTGCTCGATGGCTATCCGTGAGCATGTTATGTTGTACGTTACTTTGTGAGACTATT 1954
Query 1201 GCCAAGTTAGAGAG--TGTT-ACAGGTTTATTGACATGTTGTGATCTGAGTATGTTGTT- 1256
|||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1955 GCCAAGTTAGAGAGAGTGTTTACAGGTTTATTGACATGTTGTGTTCTGAGTATGTTGTTG 2014
Query 1257 --ACCAGTATTAGTAGTATTCAACATCCATTGAGATTTTAGAT 1297
|||| ||||||||||||||||||||||||||||||||||||
Sbjct 2015 TTACCAATATTAGTAGTATTCAACATCCATTGAGATTTTAGAT 2057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63804892695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5