BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933963
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33750.1 | Symbols: ATPUP2, PUP2 | purine permease 2 | chr2:... 1563 0.0
> AT2G33750.1 | Symbols: ATPUP2, PUP2 | purine permease 2 | chr2:14271794-14273265
REVERSE LENGTH=1077
Length=1077
Score = 1563 bits (846), Expect = 0.0
Identities = 1005/1082 (93%), Gaps = 10/1082 (1%)
Strand=Plus/Plus
Query 24 ATGAATATGAAGACCGTTCTTGTAATCATAAACTGTATATTCTTGGCCATTGGAAACTGT 83
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGATGAAGACAGTTCTTGTAATCATAAACTGTATATTCTTGGCCATTGGAAACTGT 60
Query 84 GGAGGCCCTCTTATGATGCGTCTCTACTT-CAGTAACGGTGGCCAAAGGATTTGG-TTCT 141
||||||||||| ||||||||||||||||| || || |||||| ||||||| ||| |||
Sbjct 61 GGAGGCCCTCTAATGATGCGTCTCTACTTCCA-AAATGGTGGCGAAAGGATCTGGTTTC- 118
Query 142 CAAGCTTCCTCCAAACCGTAGGTTGTCCCCTCATCCTCTTCCCTCTTCTCTTCTCCTTCA 201
|||||||||| |||||||| |||||||| ||||| |||||||||||||||| || |||
Sbjct 119 CAAGCTTCCTTCAAACCGTTGGTTGTCCACTCATTTTCTTCCCTCTTCTCTTATCTTTCC 178
Query 202 TCCGCCGTCTTCGTTGCCTTGACGAACAAGAAATGACCCCATTTTTCCTCATGAAACCTC 261
||||||||| |||||||||||| |||||||||| ||| ||||||||||||||||||||||
Sbjct 179 TCCGCCGTCGTCGTTGCCTTGAAGAACAAGAAACGACTCCATTTTTCCTCATGAAACCTC 238
Query 262 CTCTCTTCATGGCCGCTATCCTCGTTGGTCTGCTCATGGGCTTTGACAATTACCTTTACT 321
||||||| || ||||||||| | |||||| ||||| |||| |||||||||||||| ||||
Sbjct 239 CTCTCTTTATCGCCGCTATCGTTGTTGGTTTGCTCGTGGGATTTGACAATTACCTCTACT 298
Query 322 CTTACGGATTAGCTTATATTCCTGTTTCCACTGCTTCTCTGATCATCTCTGCGCAATTAG 381
||||||| ||||||||||| |||||||| ||||| ||| |||||||||| ||||||||||
Sbjct 299 CTTACGGGTTAGCTTATATCCCTGTTTCTACTGCGTCTTTGATCATCTCCGCGCAATTAG 358
Query 382 GCTTCACTGCTCTCTTTGCCTTTTTTATGGTAAAGCAAAAGTTCACACCTTTCACTATAA 441
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 359 GCTTCACTGCTCTCTTTGCATTTTTTATGGTGAAGCAAAAGTTCACACCTTTCACTATAA 418
Query 442 ACGCTGTCGTTTTGCTCACTGTTGGTGCCGTTGTCCTTGCCCTTAACTCTGATAGTGACA 501
||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 419 ACGCTATCGTTTTGCTCACTGGTGGTGCCGTAGTCCTTGCCCTTAACTCTGATAGTGACA 478
Query 502 AGCTTGCAAACGAGACACACAAGGAGTACGTTGTTGGGTTTC-TCATGAC-CATTGGTGC 559
||||||||||||||||||||||||| || ||||||||| ||| ||||||| | |||||||
Sbjct 479 AGCTTGCAAACGAGACACACAAGGAATATGTTGTTGGG-TTCATCATGACTC-TTGGTGC 536
Query 560 AGCTCTTCTCTATGCGTTTATATTGCCGCTTGTGGAGCTTACTTACAAGAAATCTTGTCA 619
|||||||||||||| |||||||||||| ||||| |||||| |||||||||||||| ||||
Sbjct 537 AGCTCTTCTCTATGGGTTTATATTGCCACTTGTCGAGCTTTCTTACAAGAAATCTGGTCA 596
Query 620 ACGAATCACGTATACGCTCGCGCTCGAGTTCCAGATGGTCTTGTGCTTTTTTGCCACTTG 679
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 597 GCGAATCACGTATACGCTCGCGCTCGAGTTCCAGATGGTCTTATGCTTTGCTGCCACTTG 656
Query 680 CT-TCTGCCTCGTGGGAATGCTAGCTGCTGGCGATTTCAAGGTAAAACATGCTTTGTTTA 738
| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 657 -TGTCTGCCTCGTGGGGATGCTAGCCGCTGGCGATTTCAAGGTAAAACATGCTTTGTTTA 715
Query 739 TTTTCAAGAATAGGGTGATAGCAGGAGAAGCAAGAGATTTTAAGCTTGGAGAGTCTTTGT 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TTTTCAAGAATAGGGTGATAGCAGGAGAAGCAAGAGATTTTAAGCTTGGAGAGTCTTTGT 775
Query 799 ACTATGTGGTGGTTGTGTTCACCGCCGTAATCTGGCAAGCATTTTTCGTGGGAGCTATTG 858
||||||||||| |||||||||| ||| ||||||||||||||||||| |||||||||||||
Sbjct 776 ACTATGTGGTGATTGTGTTCACGGCCATAATCTGGCAAGCATTTTTTGTGGGAGCTATTG 835
Query 859 GGTTGATCTTCTGTGCATCTTCTCTGGTCTCTGGAATTATGATCAGTGCTCTGCTTCCGG 918
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 836 GGTTGATCTTCTGTGCATCGTCTCTGGTCTCTGGAATTATGGTCAGTGCTCTGCTTCCGG 895
Query 919 TGACGGTGATCTTGGCCGTCATTTGTTTCCAGGAGAAGTTTCAGGCGGGGAAAGGTGTCG 978
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 896 TGACGGTGATCTTGGCCGTCATTTGCTTCCAGGAGAAGTTTCAGGCGGGGAAAGGTGTCG 955
Query 979 CTTTGGCTCTCTCGCTCTGGGGATCCGTCTCTTACTTCTATGGACAGATGAAATCCGAGG 1038
||||||||||||| ||||||||||| |||||||| |||||||||||| | ||||||||||
Sbjct 956 CTTTGGCTCTCTCCCTCTGGGGATCAGTCTCTTATTTCTATGGACAGGTTAAATCCGAGG 1015
Query 1039 AGAAGACTAAGGCTCAGGAGACACAACTGTCTCAGCTTCCAGTTACTGATTCTGAAACTT 1098
||||||||||||||||||| ||||||||||||||||||||||||||||||| || | |||
Sbjct 1016 AGAAGACTAAGGCTCAGGATACACAACTGTCTCAGCTTCCAGTTACTGATTATGTAGCTT 1075
Query 1099 AA 1100
||
Sbjct 1076 AA 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55019797320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5