BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933964
Length=1793
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33760.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2693 0.0
> AT2G33760.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr2:14275800-14277551 FORWARD LENGTH=1752
Length=1752
Score = 2693 bits (1458), Expect = 0.0
Identities = 1657/1755 (94%), Gaps = 6/1755 (0%)
Strand=Plus/Plus
Query 21 ATGACAACCAAAGTAGCAGCAAATTCTGCTGCTTACGAAGCCATAGTTCGAGCAGGTCCT 80
|||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACAACAAAAGTGGCGGCAAATTCTGCTGCTTACGAAGCCATAGTTCGAGCAGGTCCT 60
Query 81 CGTGTAAAGCAACTTCAACAAGTTCATGCTCACCTCATTGTCACTAGCTATGGTCGTAGC 140
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 61 CGTGTAAAGCAACTTCAACAAGTTCATGCTCACCTCATTGTCACGGGTTATGGTCGTAGC 120
Query 141 CGGAGTCTCTTGACAAAGCTCATCACTTTAGCTTGTTCCGCTCGAGCCATCGCTTATACT 200
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 121 CGGAGTCTCTTGACAAAGCTCATTACTTTAGCTTGTTCCGCTCGAGCCATCGCCTATACT 180
Query 201 CATCTTCTCTTCCTCTCTGTTCCTCTTCCCGATGACTTCCTCTTCAATTCGGTCATTAAA 260
||||||||||||||||| ||||| |||||||||||||||||||||||||| || || |||
Sbjct 181 CATCTTCTCTTCCTCTCCGTTCCCCTTCCCGATGACTTCCTCTTCAATTCAGTTATCAAA 240
Query 261 TCGACTTCTAAGTTGCGTTTACCTTTGCATTGCGTTGCTTATTACCGTCGTATGCTATCT 320
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 TCGACTTCTAAGTTGCGTTTACCTTTGCATTGCGTTGCTTATTACCGTCGTATGTTATCT 300
Query 321 TCTAACGTCTCTCCGAGTAACTACACTTTTACCTCTGTTATCAAGTCTTGCGCTGATCTC 380
|| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 301 TCAAACGTCTCTCCGAGTAACTACACTTTCACCTCTGTTATCAAGTCTTGCGCCGATCTC 360
Query 381 TCTGCCTTGAAAATCGGAAAAGGTGTTCATTGTCATGCAGTGGTTTCTGGGTTTGGATTG 440
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCTGCCTTGAGAATCGGAAAAGGTGTTCATTGTCATGCAGTGGTTTCTGGGTTTGGATTG 420
Query 441 GATACTTATGTTCAGGCTGCTTTGGTGACGTTTTATTCAAAGTGCGGAGATATGG-AGGC 499
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||| |||
Sbjct 421 GATACTTACGTTCAGGCTGCTTTGGTGACGTTTTATTCAAAGTGTGGCGATATGGAAGG- 479
Query 500 GGCACGCCAAGTGTTCGATAGAATGCCTGACAAGTCTGTTGTCGCGTGGAATTCGTTGGT 559
||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||
Sbjct 480 TGCACGCCAAGTGTTCGATAGAATGCCTGAGAAGTCTATTGTGGCGTGGAATTCGTTGGT 539
Query 560 TTCTGGGTTTGAGCAAAATGGGTTGGCGGAAGATGCGATTCGGGTGTTCTATCAGATGCG 619
|||||| ||||||||||||||||||||||| || || |||| |||||| |||||||||||
Sbjct 540 TTCTGGATTTGAGCAAAATGGGTTGGCGGATGAAGCAATTCAGGTGTTTTATCAGATGCG 599
Query 620 AGGATCGGGGTTTGAACCGGATTCAGCGACGTTTGTGAGCCTTCTCTCGGCTTGTGCACA 679
|| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 600 AGAATCAGGGTTTGAGCCGGATTCAGCGACGTTTGTGAGCCTTCTCTCGGCTTGTGCCCA 659
Query 680 AACTGGTGCGATTAGTTTAGGCTCTTGGGTGCATCAGTATATTGTCTCTGAGGGTCTTGA 739
|||||||||| | |||||||| ||||||||||||||||| ||| || ||||||||||||
Sbjct 660 AACTGGTGCGGTAAGTTTAGGATCTTGGGTGCATCAGTACATTATCAGTGAGGGTCTTGA 719
Query 740 CGTGAATGTTAAACTCGGTACTGCGTTGATTAACTTGTATTCTAGGTGCGGTGACGTTGG 799
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CCTGAATGTTAAACTTGGTACTGCGTTGATTAACTTGTATTCTAGGTGCGGTGACGTTGG 779
Query 800 AAAAGCCCGGGAAGTCTTTGACAAGATGAAGGAAACTAATGTGGCGGCATGGACGGCAAT 859
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 780 AAAAGCCCGGGAAGTCTTTGACAAGATGAAGGAAACTAATGTGGCTGCTTGGACGGCAAT 839
Query 860 GATCTCTGCTTATGGTACTCATGGATATGGCAAACAAGCAGTAGACCTGTTTAATAAAAT 919
||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||
Sbjct 840 GATCTCTGCTTATGGTACTCATGGATATGGCCAACAAGCTGTAGAGCTGTTTAATAAAAT 899
Query 920 GGAGGATGATTGCGGTCCAATCCCTAATAATGTAACATTTGTAGCTGTTTTATCAGCTTG 979
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 900 GGAGGATGATTGCGGTCCAATCCCAAATAACGTAACATTTGTAGCTGTTTTATCGGCTTG 959
Query 980 CGCTCATGCTGGACTCGTTGAGGATGGACGTTCGGTCTACAAGAGAATGACCGAGAGCTA 1039
|||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||
Sbjct 960 CGCTCATGCTGGACTCGTTGAGGAAGGACGTTCAGTCTACAAGAGAATGACCAAGAGCTA 1019
Query 1040 TAGATTGATCCCAGGAGTGGAACATCATGTTTGTATGGTAGATATGCTTGGACGGGCTGG 1099
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1020 TAGATTGATCCCAGGAGTGGAACATCATGTTTGTATGGTAGATATGCTTGGGCGGGCTGG 1079
Query 1100 ATTTCTGGACGAAGCTTATAGATTCATACAGCAGCTTGATGCTACAGGGAAAGCAACTGC 1159
|||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1080 ATTTCTTGACGAAGCTTATAAATTCATACATCAGCTTGATGCTACAGGGAAAGCAACTGC 1139
Query 1160 TCCAGCATTGTGGACAGCGATGCTTGGAGCTTGCAAGATGCACAGGAACTATGATCTCGG 1219
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1140 TCCAGCATTGTGGACAGCGATGCTTGGAGCATGCAAGATGCACAGGAACTATGATCTCGG 1199
Query 1220 TGTAGAAATCGCCAAGCGTCTCATAGCCCTCGAGCCAGAAAATCCCGGTCATCATGTCAT 1279
||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1200 TGTAGAAATTGCCAAGCGTCTCATAGCCCTTGAGCCAGATAATCCCGGTCATCATGTCAT 1259
Query 1280 GCTCTCAAATATCTATGCCTTGAGTGGCAAAACAGATGAAGTATCACACATAAGAGATGG 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GCTCTCAAATATCTATGCCTTGAGTGGCAAAACAGATGAAGTATCACACATAAGAGATGG 1319
Query 1340 AATGGTGAGGAATAACCTTAGAAAACAGGTCGGCTATAGCATAATTGAAGTCGAAAACAA 1399
|||| ||||||||||||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct 1320 AATGATGAGGAATAACCTTAGAAAACAGGTTGGCTATAGCGTAATTGAAGTGGAAAATAA 1379
Query 1400 GACATATCTGTTTAGTATGGGTGATGAGTCTCACCAAGAGACTGGAGAAATCTATCGGTA 1459
||||||| |||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1380 GACATATATGTTCAGTATGGGTGATGAGTCTCATCAAGAGACTGGAGAAATTTATCGGTA 1439
Query 1460 TCTGGAAACTTTGATAAGCCGGTGCAAGGAAATTGGGTATGCACCGGTTTCTGAAGAAGT 1519
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1440 TCTGGAAACTTTGATAAGCCGGTGTAAGGAAATAGGGTATGCACCGGTTTCTGAAGAAGT 1499
Query 1520 GATGCACCAAGTAGAGGAAGAGGAAAAGGAGTTTGCACTTAGATACCACAGCGAGAAGCT 1579
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1500 TATGCACCAAGTTGAGGAAGAGGAAAAGGAGTTCGCACTTAGATACCACAGCGAGAAGCT 1559
Query 1580 TGCTGTAGCATTTGGGTTGTTGAAAACAGTAGAT-TCAGCGATTACAGTTGTGAAGAATC 1638
|||||||||||| || ||||||||||| |||||| | ||| |||||| ||||||||||||
Sbjct 1560 TGCTGTAGCATTCGGTTTGTTGAAAACTGTAGATGT-AGCCATTACAATTGTGAAGAATC 1618
Query 1639 TGCGCATCTGTGAGGATTGTCATTCTGCTTTCAAGTACATTTCTATTGTATCCAATAGGC 1698
| || |||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 1619 TACGGATCTGTGAGGATTGTCATTCTGCTTTCAAGTATATTTCTATTGTGTCCAATAGAC 1678
Query 1699 AGATCA-TAGTGCGTGATAAGCTTCGGTTCCACCATTTTCAAAATGGTTCTTGTTCATGT 1757
|||||| | || | |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1679 AGATCACT-GTTAGGGATAAGCTCCGGTTTCACCATTTTCAAAATGGTTCTTGTTCATGT 1737
Query 1758 CTGGACTATTGGTAA 1772
|||||||||||||||
Sbjct 1738 CTGGACTATTGGTAA 1752
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88704363015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5