BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933966

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G33775.1 | Symbols: RALFL19 | ralf-like 19 | chr2:14288425-1...   628    8e-180


> AT2G33775.1 | Symbols: RALFL19 | ralf-like 19 | chr2:14288425-14289225 
FORWARD LENGTH=801
Length=801

 Score =  628 bits (340),  Expect = 8e-180
 Identities = 362/373 (97%), Gaps = 0/373 (0%)
 Strand=Plus/Plus

Query  1    AACAAAACAAAGAAAACCAAATGGGTATTAAGTTCTTGTTGATTCTTGGCCTCTTGGCCC  60
            |||||||||||||||||||||||||||| ||| |||||||||| |||||||||||| |||
Sbjct  102  AACAAAACAAAGAAAACCAAATGGGTATCAAGATCTTGTTGATCCTTGGCCTCTTGACCC  161

Query  61   TGGCCGTAGTCGCCGAGTCTGCCAATGCCACATGGACCCTGACCAAATCCTGTGTCAATG  120
            |||| |||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct  162  TGGCTGTAGTCGCCGAGTCAGCCAATGCCACATGGACCCTTACCAAATCTTGTGTCAATG  221

Query  121  GCCAAGGTTGCATTGGAGAGGATGGTGAGCTTGACTACTTGATGGATTCTGAGACCAACC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  222  GCCAAGGTTGCATTGGAGAGGATGGTGAGCTTGACTACTTGATGGATTCTGAGACCAACC  281

Query  181  GGCGCCAACTAGCCGCGAGGCGCAGCTACATCAGTTACGGTGCTCTCAGGAAGAACAATG  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  282  GGCGCCAACTAGCCGCGAGGCGCAGCTACATCAGTTACGGTGCTCTCAGGAAGAACAATG  341

Query  241  TGCCGTGCAGCCGACGTGGCCGGTCTTACTATGATTGCAAGAAGAGGAAAAGGGCTAACC  300
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  342  TGCCGTGCAGCCGACGTGGCCGGTCTTACTACGATTGCAAGAAGAGGAAAAGGGCTAACC  401

Query  301  CTTACAGACGTGGCTGCAGCGTAATCACGCATTGCTACAGGCAAACTTCTTAATTTCGAG  360
            |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct  402  CTTACAGACGTGGCTGCAGCGTCATCACGCATTGCTACAGGCAAACTTCTTAATTTCGGG  461

Query  361  AAGCATTTATACA  373
            |||||||||||||
Sbjct  462  AAGCATTTATACA  474



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17543444401


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5