BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933971
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33205.1 | Symbols: | Serinc-domain containing serine and s... 536 2e-151
> AT2G33205.1 | Symbols: | Serinc-domain containing serine and
sphingolipid biosynthesis protein | chr2:14070987-14073211
REVERSE LENGTH=1269
Length=1269
Score = 536 bits (290), Expect = 2e-151
Identities = 341/366 (93%), Gaps = 2/366 (1%)
Strand=Plus/Plus
Query 537 GGAGAAATCG-TGCGTGTTGGTGCAGCGATATTTCTTGGTCTTCAACTTGTCAGCGTTAT 595
|||||||||| | ||||||||||||| ||||||||||||||| |||||||| || |||||
Sbjct 475 GGAGAAATCGCT-CGTGTTGGTGCAGGGATATTTCTTGGTCTGCAACTTGTAAGTGTTAT 533
Query 596 CGAATTCATCACTTGGTGGAATAACTATTGGATGCCTCATGACCAAAGTAAGCAAAGCTG 655
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 534 CGAATTCATCACTTGGTGGAATAACTATTGGATGCCTCAAAACCAAAGTAAGCAAAGCTG 593
Query 656 CTCCTTTGGTTTGGTTATGTCAACAGTTTTCTACATCGGTTCTGTTTGTGGGATCGCAGT 715
|| ||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 594 TTCTTTTGGTTTGGTCATGTCAATAGTTTTCTACATCGGTTCTGTTTGCGGGATCGCAGT 653
Query 716 GATGTACTACTTTTATGCAGCTTCCACTGCTTGTGTCCTCAATATGTTCTTCATCTCATG 775
||||||||||||||||| |||||| |||||||||| ||||||||| ||||||||||||||
Sbjct 654 GATGTACTACTTTTATGGAGCTTCTACTGCTTGTGGCCTCAATATATTCTTCATCTCATG 713
Query 776 GACTGTTGTTCTTCTAATCGTTATGATGGTTATGTCCTTGCATTCAAAGGTGAAGTATAG 835
||||||| | ||| ||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 714 GACTGTTATACTTTTAATCGTTATGATGGTTATTTCCTTGCATTCAAAGGTGAAGAATAG 773
Query 836 AGGACTTTTGTCTTCCGGGATTATGGCTTCCTACATTGTCTTTCTATGTTGGTCTGCGAT 895
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 774 AGGTCTTTTGTCTTCCGGGATTATGGCTTCTTACATTGTCTTCCTATGTTGGTCTGCGAT 833
Query 896 CAGAAG 901
||||||
Sbjct 834 CAGAAG 839
Score = 298 bits (161), Expect = 8e-80
Identities = 216/242 (89%), Gaps = 5/242 (2%)
Strand=Plus/Plus
Query 21 ATGAATGGACCAGCAGAAACTGCTCCACCGG-TGAGATCATTGCAGATCAGTCCTGGTGA 79
||||||||| |||| | || ||| || ||| ||| |||||||||||||||| |||||
Sbjct 1 ATGAATGGATCAGC-GGAA--GCTACA-CGGACAAGACCATTGCAGATCAGTCCCGGTGA 56
Query 80 TTTAGAGGCTGCTCATCTTGATGAACTCATAAGGGAAGTAGAACAGAGGAGTCTCTATTA 139
|||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||
Sbjct 57 TTTAGAGGCTGCTCATCTAGATGAACTCATAATGGAAATAGAACAGAGGAGTCTCTATTA 116
Query 140 CTACCAAGAGAAAAACAAGTCCTTGAGAGCTCGATATGTCTATGGAACCATCTTCTTGAT 199
|||||||||||||||||||||||||||||||| ||| ||| |||||||| ||||||||
Sbjct 117 TTACCAAGAGAAAAACAAGTCCTTGAGAGCTCGTTATACCTACGGAACCATTTTCTTGAT 176
Query 200 TATAAACCTATGCGCTTGGTTCATTCGTGACTATGCACAAAAGGCTCTGGCCTTGCTTCC 259
||||| |||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 177 CATAAATCTATGCGCTTGGTTTATCCGTGACTACGCACAAAAGGCTCTGGCCTTGCTTCC 236
Query 260 AT 261
||
Sbjct 237 AT 238
Score = 294 bits (159), Expect = 1e-78
Identities = 191/205 (93%), Gaps = 8/205 (4%)
Strand=Plus/Plus
Query 900 AGTTTCCTTATAGCTATAGGCGCCATAGTGATGGCAACATTCTCAACTGGGATCGATTCA 959
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 907 AGTTTCCTTATAGCTATAGGCGCCATTGTGATGGCAACATTCTCAACCGGGATCGATTCA 966
Query 960 GAATCCTTCAAGTTCGAGTTCCGTAAAGATGAAGCTAAAGAAGAAGACGATATACCATAC 1019
||||||||| | | ||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 967 GAATCCTTC-A----G-GTTTCGTAAAGATGAAGCGAAAGAAGAAGACGATATACCATAC 1020
Query 1020 AGCTATGGATTCTTCCACCTTGTTTTCTCCTTAGGAGCGATGTACTTTGCTATGTTGTGT 1079
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
Sbjct 1021 AGCTATGGATTCTTCCACCTTGTGTTCTCCTTAGGAGCAATGTACTTTGCTATGTTGT-T 1079
Query 1080 TTATCAGCTGGAACCTTTCACATTC 1104
| |||||||||||||||||||||||
Sbjct 1080 T-ATCAGCTGGAACCTTTCACATTC 1103
Score = 237 bits (128), Expect = 2e-61
Identities = 148/158 (94%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 285 ATATTTTTCCTTATTATGTTCCTCTCAACATGGAACACAATGAAACTCCACGAAGCTCAA 344
||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 ATATTTTACTTTGTTATGTTCCTCTCAACATGGAACACAATGAAACTCCACGAAGCTCAA 375
Query 345 AACAGTTGGCACTCGGATTATTGGAGCTTCAAGTTTTTTCTGCTGGTTTTAGCCATGGTA 404
||||| |||||||||||| |||||| ||| ||||||||||| |||||| ||| |||||||
Sbjct 376 AACAGCTGGCACTCGGATAATTGGATCTTTAAGTTTTTTCTACTGGTTATAGTCATGGTA 435
Query 405 GCTTCTTTCTTCATACCTCAGCTTTACATCCAAATTTA 442
||||||||||||||||||||||||||||||||||||||
Sbjct 436 GCTTCTTTCTTCATACCTCAGCTTTACATCCAAATTTA 473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56626214760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5