BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933974
Length=679
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33793.1 | Symbols: | unknown protein; Has 35333 Blast hits... 1138 0.0
> AT2G33793.1 | Symbols: | unknown protein; Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:14296994-14300506
FORWARD LENGTH=1401
Length=1401
Score = 1138 bits (616), Expect = 0.0
Identities = 659/680 (97%), Gaps = 1/680 (0%)
Strand=Plus/Plus
Query 1 CTCTCTCAGTTTCGTCTACAATGTCGTCTACCAGAAGAGGCACTAAGAGAACTCGGCCAG 60
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 94 CTCTCTAAGTTTCGTCTGCAATGTCGTCTACCAGAAGAGGCACTAAGAGAACTCGGCCAG 153
Query 61 AGCCGCCGCAATCGCTCAAGAAGCCAACACCGAAAGCGAAACTCCAGGACGATTTGGATG 120
||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||
Sbjct 154 AGCCGCCGCAATCGCTCAAGAAGCCAACACCGAAAGCAAAACTCCCGGACGAATTGGATG 213
Query 121 TCGATGTTTCTAGCGATTTCAAAGGAATCATGTCGGCGTTGCAGCAATTCAGAGAGAAGG 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 214 TCGATGTTTCTAGCGATTTCAAAGGAATCATGTCGGCGTTGCAGCAATTCAGAGAGAAAG 273
Query 181 CGCACGAAGATGGCCGGAAGAAGAAGGAAGAGAGCATTTCCAGTGTCTCCACTGAGGTGA 240
|||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 274 CGCACGAAGATGGCCGTAAGAAGAAGGAAGAAAGCATTTCCAGTGTGTCCACTGAGGTGA 333
Query 241 AGTCAAAGATTGACGAGCTGAAGTCAAAACTTGAGAAAGAAAGACAAAACTTTGCCAAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 334 AGTCAAAGATTGACGAGCTGAAGTCAAAACTTGAGAAAGAAAGACAAAACTTTTCCAAAG 393
Query 301 CACTTTCAAAGAGTTCAAAGGAGTGTGAGAATATCTTGAAGGATGAATCTGCCAAGTTTG 360
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 394 CACTTTCAAAGAGTTCAAAGGAGTGTGAGAATATTTTGAAGGATGAAGCTGCCAAGTTTG 453
Query 361 AGGAGCTTCATAAGAAATTCGTGAAAGACAAAGCTGATCATCTACAGGGTTTGAAAGACA 420
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 454 AGGAGCTTCATAAGAAATTCGTGAAAGACAAAGCTGATCATCTACAAGGCTTGAAAGACA 513
Query 421 CTATTTCAAAGTTTGAGGAGGACAAGGAGAGGCTCTACATGCGATATGAGCAGCTAAGGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 CTATTTCAAAGTTTGAGGAGGACAAGGAGAGGCTCTACATGCGATATGAGCAGCTAAGGA 573
Query 481 AGAAGGAGAAGACAATGATAACAGAACAGGAGAAGTTCTGCACTGAAAAGCTTGCTCAAT 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 574 AGAAGGAGAAGACAATGATAACGGAACAGGAGAAGTTCTGCACTGAAAAGCTTGCTCAAT 633
Query 541 TGGAAGAGTCACTGAAGAAAAAGAAACGGGGTGACAAAACTTTCAGCATACTGAGGAAAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 TGGAAGAGTCACTGAAGAAAAAGAAACGGGGTGACAAAACTTTCAGCATACTGAGGAAAA 693
Query 601 CTCTCGGCTCTTTTCTGGAGAACGAAGCTTCTGATGAAGAATTCCCACCTGATGAGTGAA 660
||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 694 CTCTCGGCTCTTTTCTGGAAAACGAGGCTTCTGATGAGGAATTCCCACCTGATGAGTGAA 753
Query 661 AGATCAACGTCTCTT-CACT 679
|||| ||||||| || ||||
Sbjct 754 AGATTAACGTCTTTTTCACT 773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32853132138
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5